Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.76■□□□□ 0.27
SHMT2P34897 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.76■□□□□ 0.27
SHMT2P34897 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC16.76■□□□□ 0.27
SHMT2P34897 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
SHMT2P34897 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.76■□□□□ 0.27
SHMT2P34897 PGM5P2-202ENST00000637225 1043 ntBASIC16.76■□□□□ 0.27
SHMT2P34897 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
SHMT2P34897 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.76■□□□□ 0.27
SHMT2P34897 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 PCDH8P1-201ENST00000428983 2773 ntBASIC16.76■□□□□ 0.27
SHMT2P34897 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
SHMT2P34897 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SHMT2P34897 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.75■□□□□ 0.27
SHMT2P34897 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 CICP6-201ENST00000457191 2729 ntBASIC16.75■□□□□ 0.27
SHMT2P34897 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.75■□□□□ 0.27
SHMT2P34897 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.75■□□□□ 0.27
SHMT2P34897 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.75■□□□□ 0.27
SHMT2P34897 AC136632.2-201ENST00000512891 861 ntBASIC16.75■□□□□ 0.27
SHMT2P34897 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.75■□□□□ 0.27
SHMT2P34897 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.75■□□□□ 0.27
SHMT2P34897 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.75■□□□□ 0.27
SHMT2P34897 AC012640.2-201ENST00000561606 901 ntBASIC16.75■□□□□ 0.27
SHMT2P34897 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.75■□□□□ 0.27
SHMT2P34897 AL356488.2-201ENST00000602755 427 ntBASIC16.75■□□□□ 0.27
SHMT2P34897 AC116407.3-201ENST00000623905 1129 ntBASIC16.75■□□□□ 0.27
SHMT2P34897 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.75■□□□□ 0.27
SHMT2P34897 PCDHB19P-201ENST00000570871 2371 ntBASIC16.75■□□□□ 0.27
SHMT2P34897 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SHMT2P34897 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.75■□□□□ 0.27
SHMT2P34897 AC243591.1-201ENST00000452967 1364 ntBASIC16.75■□□□□ 0.27
SHMT2P34897 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
SHMT2P34897 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.74■□□□□ 0.27
SHMT2P34897 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.74■□□□□ 0.27
SHMT2P34897 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.74■□□□□ 0.27
SHMT2P34897 CROCCP2-202ENST00000412962 2773 ntBASIC16.74■□□□□ 0.27
SHMT2P34897 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SHMT2P34897 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SHMT2P34897 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.74■□□□□ 0.27
SHMT2P34897 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.74■□□□□ 0.27
SHMT2P34897 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 ELK2BP-201ENST00000415014 1224 ntBASIC16.74■□□□□ 0.27
SHMT2P34897 AL590627.1-203ENST00000421194 1026 ntBASIC16.74■□□□□ 0.27
SHMT2P34897 AC092910.1-201ENST00000482027 1129 ntBASIC16.74■□□□□ 0.27
SHMT2P34897 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.74■□□□□ 0.27
SHMT2P34897 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 BX640515.1-201ENST00000617215 977 ntBASIC16.74■□□□□ 0.27
SHMT2P34897 AC005593.1-201ENST00000624894 515 ntBASIC16.74■□□□□ 0.27
SHMT2P34897 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.74■□□□□ 0.27
SHMT2P34897 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.74■□□□□ 0.27
SHMT2P34897 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.74■□□□□ 0.27
SHMT2P34897 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SHMT2P34897 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.74■□□□□ 0.27
SHMT2P34897 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms