Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.04■□□□□ 0.8
HLA-DOAP06340 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HLA-DOAP06340 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 AL139400.1-201ENST00000366220 510 ntBASIC20.03■□□□□ 0.8
HLA-DOAP06340 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 KRT8P48-201ENST00000515599 1220 ntBASIC20.03■□□□□ 0.8
HLA-DOAP06340 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 DAD1-205ENST00000543337 501 ntTSL 3 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 AL009183.1-201ENST00000603760 355 ntBASIC20.03■□□□□ 0.8
HLA-DOAP06340 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 AC106028.4-201ENST00000614509 607 ntBASIC20.03■□□□□ 0.8
HLA-DOAP06340 AP001350.2-201ENST00000625104 1094 ntBASIC20.03■□□□□ 0.8
HLA-DOAP06340 ORC5-208ENST00000626700 344 ntTSL 3 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 AL021920.2-201ENST00000624828 1351 ntBASIC20.03■□□□□ 0.8
HLA-DOAP06340 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.03■□□□□ 0.8
HLA-DOAP06340 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HLA-DOAP06340 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 AKAP8P1-201ENST00000434743 1349 ntBASIC20.02■□□□□ 0.8
HLA-DOAP06340 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.02■□□□□ 0.8
HLA-DOAP06340 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 AC109635.5-201ENST00000533593 962 ntBASIC20.02■□□□□ 0.8
HLA-DOAP06340 AC087641.1-201ENST00000557561 1021 ntBASIC20.02■□□□□ 0.8
HLA-DOAP06340 AL135744.1-201ENST00000565098 629 ntBASIC20.02■□□□□ 0.8
HLA-DOAP06340 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HLA-DOAP06340 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
HLA-DOAP06340 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC20.02■□□□□ 0.79
HLA-DOAP06340 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.02■□□□□ 0.79
HLA-DOAP06340 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
HLA-DOAP06340 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
HLA-DOAP06340 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
HLA-DOAP06340 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.79
HLA-DOAP06340 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 CBR1-202ENST00000399191 838 ntTSL 3 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 AL627223.1-201ENST00000416693 442 ntBASIC20.01■□□□□ 0.79
HLA-DOAP06340 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC20.01■□□□□ 0.79
HLA-DOAP06340 AC005237.2-201ENST00000434368 219 ntBASIC20.01■□□□□ 0.79
HLA-DOAP06340 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
HLA-DOAP06340 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms