Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC10.48□□□□□ -0.73
APOBP04114 PAM16-204ENST00000571941 674 ntTSL 3 BASIC10.48□□□□□ -0.73
APOBP04114 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC10.48□□□□□ -0.73
APOBP04114 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC10.48□□□□□ -0.73
APOBP04114 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC10.48□□□□□ -0.73
APOBP04114 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 AC012317.2-201ENST00000623305 2251 ntBASIC10.47□□□□□ -0.73
APOBP04114 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC10.47□□□□□ -0.73
APOBP04114 AL589987.1-201ENST00000453380 819 ntBASIC10.47□□□□□ -0.73
APOBP04114 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC10.47□□□□□ -0.73
APOBP04114 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC10.47□□□□□ -0.73
APOBP04114 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 HAUS4P1-201ENST00000406739 1145 ntBASIC10.47□□□□□ -0.73
APOBP04114 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC10.47□□□□□ -0.73
APOBP04114 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 CYP2A7P1-201ENST00000595391 815 ntBASIC10.47□□□□□ -0.73
APOBP04114 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
APOBP04114 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC10.47□□□□□ -0.73
APOBP04114 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
APOBP04114 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC10.47□□□□□ -0.73
APOBP04114 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC10.47□□□□□ -0.73
APOBP04114 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC10.47□□□□□ -0.73
APOBP04114 SLC25A1P3-201ENST00000395415 828 ntBASIC10.46□□□□□ -0.73
APOBP04114 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC10.46□□□□□ -0.73
APOBP04114 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC10.46□□□□□ -0.73
APOBP04114 ARL16-210ENST00000574938 751 ntTSL 2 BASIC10.46□□□□□ -0.73
APOBP04114 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC10.46□□□□□ -0.73
APOBP04114 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC10.46□□□□□ -0.73
APOBP04114 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC10.46□□□□□ -0.73
APOBP04114 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC10.46□□□□□ -0.73
APOBP04114 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC10.46□□□□□ -0.73
APOBP04114 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC10.46□□□□□ -0.73
APOBP04114 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC10.46□□□□□ -0.73
APOBP04114 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC10.46□□□□□ -0.73
APOBP04114 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC10.46□□□□□ -0.73
APOBP04114 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC10.46□□□□□ -0.73
APOBP04114 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.73
APOBP04114 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
APOBP04114 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC10.46□□□□□ -0.74
APOBP04114 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
APOBP04114 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC10.46□□□□□ -0.74
APOBP04114 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
APOBP04114 MIR663B-201ENST00000408361 115 ntBASIC10.46□□□□□ -0.74
APOBP04114 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC10.46□□□□□ -0.74
APOBP04114 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC10.46□□□□□ -0.74
APOBP04114 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC10.46□□□□□ -0.74
APOBP04114 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
APOBP04114 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
APOBP04114 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC10.46□□□□□ -0.74
APOBP04114 AC104581.1-202ENST00000635932 2618 ntBASIC10.46□□□□□ -0.74
APOBP04114 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
APOBP04114 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
APOBP04114 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC10.46□□□□□ -0.74
APOBP04114 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC10.46□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms