Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.56■□□□□ 0.24
LDLRP01130 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.56■□□□□ 0.24
LDLRP01130 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.56■□□□□ 0.24
LDLRP01130 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.56■□□□□ 0.24
LDLRP01130 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
LDLRP01130 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.56■□□□□ 0.24
LDLRP01130 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
LDLRP01130 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC16.56■□□□□ 0.24
LDLRP01130 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.56■□□□□ 0.24
LDLRP01130 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.56■□□□□ 0.24
LDLRP01130 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.56■□□□□ 0.24
LDLRP01130 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.56■□□□□ 0.24
LDLRP01130 AC005332.3-201ENST00000589904 676 ntBASIC16.56■□□□□ 0.24
LDLRP01130 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.56■□□□□ 0.24
LDLRP01130 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.56■□□□□ 0.24
LDLRP01130 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.56■□□□□ 0.24
LDLRP01130 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
LDLRP01130 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.56■□□□□ 0.24
LDLRP01130 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
LDLRP01130 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LDLRP01130 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.56■□□□□ 0.24
LDLRP01130 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.55■□□□□ 0.24
LDLRP01130 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC16.55■□□□□ 0.24
LDLRP01130 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.55■□□□□ 0.24
LDLRP01130 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.55■□□□□ 0.24
LDLRP01130 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
LDLRP01130 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
LDLRP01130 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.55■□□□□ 0.24
LDLRP01130 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LDLRP01130 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.55■□□□□ 0.24
LDLRP01130 AC104390.1-201ENST00000555663 520 ntBASIC16.55■□□□□ 0.24
LDLRP01130 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.55■□□□□ 0.24
LDLRP01130 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.55■□□□□ 0.24
LDLRP01130 AL390719.2-201ENST00000606993 987 ntBASIC16.55■□□□□ 0.24
LDLRP01130 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LDLRP01130 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.55■□□□□ 0.24
LDLRP01130 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
LDLRP01130 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.55■□□□□ 0.24
LDLRP01130 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
LDLRP01130 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
LDLRP01130 AC005915.1-201ENST00000624912 2018 ntBASIC16.55■□□□□ 0.24
LDLRP01130 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
LDLRP01130 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
LDLRP01130 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.54■□□□□ 0.24
LDLRP01130 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LDLRP01130 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.54■□□□□ 0.24
LDLRP01130 DDX43P3-201ENST00000441064 443 ntBASIC16.54■□□□□ 0.24
LDLRP01130 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.54■□□□□ 0.24
LDLRP01130 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC16.54■□□□□ 0.24
LDLRP01130 POLD2P1-201ENST00000511220 997 ntBASIC16.54■□□□□ 0.24
LDLRP01130 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms