Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC022211.2-201ENST00000585075 2527 ntBASIC16.41■□□□□ 0.22
SEMA3DO95025 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
SEMA3DO95025 FRMD8P1-201ENST00000440433 1524 ntBASIC16.4■□□□□ 0.22
SEMA3DO95025 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 AL162727.3-201ENST00000635661 2787 ntBASIC16.4■□□□□ 0.22
SEMA3DO95025 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 AL118508.1-201ENST00000613502 2345 ntBASIC16.4■□□□□ 0.22
SEMA3DO95025 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.4■□□□□ 0.22
SEMA3DO95025 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.4■□□□□ 0.22
SEMA3DO95025 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC16.4■□□□□ 0.22
SEMA3DO95025 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
SEMA3DO95025 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.4■□□□□ 0.22
SEMA3DO95025 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.4■□□□□ 0.22
SEMA3DO95025 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.4■□□□□ 0.22
SEMA3DO95025 LINC01711-201ENST00000598340 967 ntBASIC16.4■□□□□ 0.22
SEMA3DO95025 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
SEMA3DO95025 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
SEMA3DO95025 NKILA-202ENST00000614771 2598 ntBASIC16.39■□□□□ 0.22
SEMA3DO95025 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SEMA3DO95025 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SEMA3DO95025 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
SEMA3DO95025 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 NCF1C-201ENST00000438382 1427 ntBASIC16.39■□□□□ 0.21
SEMA3DO95025 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 AC011676.5-201ENST00000624864 2660 ntBASIC16.39■□□□□ 0.21
SEMA3DO95025 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.39■□□□□ 0.21
SEMA3DO95025 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.39■□□□□ 0.21
SEMA3DO95025 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.39■□□□□ 0.21
SEMA3DO95025 MTDHP3-201ENST00000594186 672 ntBASIC16.39■□□□□ 0.21
SEMA3DO95025 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.39■□□□□ 0.21
SEMA3DO95025 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
SEMA3DO95025 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
SEMA3DO95025 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
SEMA3DO95025 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.39■□□□□ 0.21
SEMA3DO95025 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
SEMA3DO95025 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms