Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CHMP2AO43633 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP2AO43633 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP2AO43633 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CHMP2AO43633 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP2AO43633 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.2■□□□□ 0.66
CHMP2AO43633 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP2AO43633 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CHMP2AO43633 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CHMP2AO43633 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
CHMP2AO43633 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.19■□□□□ 0.66
CHMP2AO43633 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
CHMP2AO43633 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP2AO43633 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CHMP2AO43633 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP2AO43633 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CHMP2AO43633 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CHMP2AO43633 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CHMP2AO43633 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CHMP2AO43633 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC19.19■□□□□ 0.66
CHMP2AO43633 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP2AO43633 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP2AO43633 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.19■□□□□ 0.66
CHMP2AO43633 AC010507.1-201ENST00000633895 436 ntBASIC19.19■□□□□ 0.66
CHMP2AO43633 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CHMP2AO43633 LINC02012-201ENST00000608206 1725 ntBASIC19.19■□□□□ 0.66
CHMP2AO43633 AC026471.1-201ENST00000564629 3026 ntBASIC19.19■□□□□ 0.66
CHMP2AO43633 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC19.19■□□□□ 0.66
CHMP2AO43633 AC002310.6-201ENST00000624451 1377 ntBASIC19.19■□□□□ 0.66
CHMP2AO43633 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CHMP2AO43633 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CHMP2AO43633 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHMP2AO43633 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP2AO43633 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CHMP2AO43633 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
CHMP2AO43633 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHMP2AO43633 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CHMP2AO43633 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHMP2AO43633 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP2AO43633 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP2AO43633 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
CHMP2AO43633 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CHMP2AO43633 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.18■□□□□ 0.66
CHMP2AO43633 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.18■□□□□ 0.66
CHMP2AO43633 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
CHMP2AO43633 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CHMP2AO43633 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.18■□□□□ 0.66
CHMP2AO43633 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
CHMP2AO43633 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC19.18■□□□□ 0.66
CHMP2AO43633 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CHMP2AO43633 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP2AO43633 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
CHMP2AO43633 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
CHMP2AO43633 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.17■□□□□ 0.66
CHMP2AO43633 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
CHMP2AO43633 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC19.17■□□□□ 0.66
CHMP2AO43633 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP2AO43633 CD63-210ENST00000550776 870 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP2AO43633 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.17■□□□□ 0.66
CHMP2AO43633 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CHMP2AO43633 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.17■□□□□ 0.66
CHMP2AO43633 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP2AO43633 LETM1P2-201ENST00000597330 2178 ntBASIC19.17■□□□□ 0.66
CHMP2AO43633 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
CHMP2AO43633 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.17■□□□□ 0.66
CHMP2AO43633 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms