Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 MED15P5-201ENST00000423150 992 ntBASIC20.13■□□□□ 0.81
RNF41Q9H4P4 PMS2P1-201ENST00000431037 1228 ntBASIC20.13■□□□□ 0.81
RNF41Q9H4P4 AP000347.1-202ENST00000435868 847 ntBASIC20.13■□□□□ 0.81
RNF41Q9H4P4 HCG4B-203ENST00000450128 991 ntBASIC20.13■□□□□ 0.81
RNF41Q9H4P4 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.13■□□□□ 0.81
RNF41Q9H4P4 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 KRT18P58-201ENST00000527480 1120 ntBASIC20.13■□□□□ 0.81
RNF41Q9H4P4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 REXO1L3P-201ENST00000622202 1288 ntBASIC20.13■□□□□ 0.81
RNF41Q9H4P4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
RNF41Q9H4P4 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 MIR574-201ENST00000385209 96 ntBASIC20.12■□□□□ 0.81
RNF41Q9H4P4 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 AC140113.2-201ENST00000604370 208 ntBASIC20.12■□□□□ 0.81
RNF41Q9H4P4 AC064836.3-201ENST00000607928 673 ntBASIC20.12■□□□□ 0.81
RNF41Q9H4P4 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
RNF41Q9H4P4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 TOP3BP1-201ENST00000420768 1380 ntBASIC20.11■□□□□ 0.81
RNF41Q9H4P4 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 AC107918.2-201ENST00000530817 355 ntBASIC20.11■□□□□ 0.81
RNF41Q9H4P4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.11■□□□□ 0.81
RNF41Q9H4P4 KRT8P49-201ENST00000604166 1432 ntBASIC20.1■□□□□ 0.81
RNF41Q9H4P4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 IGLL3P-201ENST00000412472 434 ntBASIC20.1■□□□□ 0.81
RNF41Q9H4P4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 AC007967.2-201ENST00000432613 625 ntBASIC20.1■□□□□ 0.81
RNF41Q9H4P4 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 FAM185BP-201ENST00000443595 716 ntBASIC20.1■□□□□ 0.81
RNF41Q9H4P4 KRT18P3-201ENST00000451602 1288 ntBASIC20.1■□□□□ 0.81
RNF41Q9H4P4 CXCL1P1-201ENST00000502804 216 ntBASIC20.1■□□□□ 0.81
RNF41Q9H4P4 RNA5SP416-201ENST00000516838 111 ntBASIC20.1■□□□□ 0.81
RNF41Q9H4P4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 WDR88-203ENST00000592765 651 ntTSL 5 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RNF41Q9H4P4 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms