Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 DOC2GP-204ENST00000639052 2548 ntBASIC16.45■□□□□ 0.22
VMP1Q96GC9 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 MED16-201ENST00000269814 1199 ntTSL 5 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 RBM17P3-201ENST00000417687 1192 ntBASIC16.45■□□□□ 0.22
VMP1Q96GC9 AC103564.2-201ENST00000432853 1299 ntBASIC16.45■□□□□ 0.22
VMP1Q96GC9 SRP19-202ENST00000445150 833 ntTSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 ABCD1P5-201ENST00000445663 754 ntBASIC16.45■□□□□ 0.22
VMP1Q96GC9 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.45■□□□□ 0.22
VMP1Q96GC9 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 AC105020.1-201ENST00000435356 2205 ntBASIC16.45■□□□□ 0.22
VMP1Q96GC9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC16.45■□□□□ 0.22
VMP1Q96GC9 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
VMP1Q96GC9 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 AL121912.1-201ENST00000603683 238 ntBASIC16.44■□□□□ 0.22
VMP1Q96GC9 AC008608.2-201ENST00000606089 416 ntBASIC16.44■□□□□ 0.22
VMP1Q96GC9 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
VMP1Q96GC9 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
VMP1Q96GC9 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.43■□□□□ 0.22
VMP1Q96GC9 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VMP1Q96GC9 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms