Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.12■□□□□ 0.81
BRF1Q92994 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC20.12■□□□□ 0.81
BRF1Q92994 NABP1-203ENST00000409510 843 ntTSL 5 BASIC20.12■□□□□ 0.81
BRF1Q92994 DUX4L17-201ENST00000557360 1267 ntBASIC20.12■□□□□ 0.81
BRF1Q92994 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC20.12■□□□□ 0.81
BRF1Q92994 AC139887.3-201ENST00000568585 713 ntBASIC20.12■□□□□ 0.81
BRF1Q92994 TP73-AS1-207ENST00000624167 988 ntBASIC20.12■□□□□ 0.81
BRF1Q92994 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
BRF1Q92994 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.12■□□□□ 0.81
BRF1Q92994 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC20.12■□□□□ 0.81
BRF1Q92994 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.12■□□□□ 0.81
BRF1Q92994 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
BRF1Q92994 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRF1Q92994 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRF1Q92994 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
BRF1Q92994 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
BRF1Q92994 AC243591.1-201ENST00000452967 1364 ntBASIC20.11■□□□□ 0.81
BRF1Q92994 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRF1Q92994 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRF1Q92994 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC20.11■□□□□ 0.81
BRF1Q92994 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRF1Q92994 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.11■□□□□ 0.81
BRF1Q92994 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC20.11■□□□□ 0.81
BRF1Q92994 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 AC004706.3-202ENST00000621574 984 ntBASIC20.11■□□□□ 0.81
BRF1Q92994 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
BRF1Q92994 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.11■□□□□ 0.81
BRF1Q92994 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.11■□□□□ 0.81
BRF1Q92994 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
BRF1Q92994 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
BRF1Q92994 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.1■□□□□ 0.81
BRF1Q92994 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.1■□□□□ 0.81
BRF1Q92994 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
BRF1Q92994 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC20.1■□□□□ 0.81
BRF1Q92994 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.1■□□□□ 0.81
BRF1Q92994 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
BRF1Q92994 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.1■□□□□ 0.81
BRF1Q92994 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.1■□□□□ 0.81
BRF1Q92994 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.1■□□□□ 0.81
BRF1Q92994 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC20.1■□□□□ 0.81
BRF1Q92994 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.1■□□□□ 0.81
BRF1Q92994 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
BRF1Q92994 IRF5-214ENST00000613821 595 ntTSL 5 BASIC20.1■□□□□ 0.81
BRF1Q92994 AL691432.3-201ENST00000621860 400 ntBASIC20.1■□□□□ 0.81
BRF1Q92994 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.1■□□□□ 0.81
BRF1Q92994 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
BRF1Q92994 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
BRF1Q92994 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
BRF1Q92994 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.09■□□□□ 0.81
BRF1Q92994 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
BRF1Q92994 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.09■□□□□ 0.81
BRF1Q92994 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.09■□□□□ 0.81
BRF1Q92994 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.09■□□□□ 0.81
BRF1Q92994 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.09■□□□□ 0.81
BRF1Q92994 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.09■□□□□ 0.81
BRF1Q92994 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC20.09■□□□□ 0.81
BRF1Q92994 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.09■□□□□ 0.81
BRF1Q92994 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
BRF1Q92994 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.09■□□□□ 0.81
BRF1Q92994 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
BRF1Q92994 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
BRF1Q92994 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC20.08■□□□□ 0.81
BRF1Q92994 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
BRF1Q92994 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms