Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
VPS52Q8N1B4 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 BCAR1-209ENST00000546196 1340 ntBASIC18.57■□□□□ 0.56
VPS52Q8N1B4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 AC096734.2-201ENST00000562054 433 ntBASIC18.57■□□□□ 0.56
VPS52Q8N1B4 PDPK2P-202ENST00000562415 1191 ntBASIC18.57■□□□□ 0.56
VPS52Q8N1B4 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
VPS52Q8N1B4 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 LINC02084-201ENST00000606069 1096 ntBASIC18.56■□□□□ 0.56
VPS52Q8N1B4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS52Q8N1B4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.55■□□□□ 0.56
VPS52Q8N1B4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms