Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC21.24■□□□□ 0.99
COL5A3P25940 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC21.24■□□□□ 0.99
COL5A3P25940 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 AC016396.2-201ENST00000562575 1417 ntBASIC21.24■□□□□ 0.99
COL5A3P25940 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC21.24■□□□□ 0.99
COL5A3P25940 LITAF-210ENST00000571976 548 ntTSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 LITAF-214ENST00000574703 486 ntTSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 SSH2-210ENST00000582084 560 ntTSL 3 BASIC21.24■□□□□ 0.99
COL5A3P25940 MPDU1-223ENST00000582151 728 ntBASIC21.24■□□□□ 0.99
COL5A3P25940 AL008721.1-201ENST00000609964 604 ntBASIC21.24■□□□□ 0.99
COL5A3P25940 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
COL5A3P25940 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
COL5A3P25940 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.23■□□□□ 0.99
COL5A3P25940 AL035456.1-201ENST00000456064 1369 ntBASIC21.23■□□□□ 0.99
COL5A3P25940 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.23■□□□□ 0.99
COL5A3P25940 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.23■□□□□ 0.99
COL5A3P25940 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC21.23■□□□□ 0.99
COL5A3P25940 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 MTND6P24-201ENST00000440466 518 ntBASIC21.23■□□□□ 0.99
COL5A3P25940 TP53TG3HP-202ENST00000569755 579 ntBASIC21.23■□□□□ 0.99
COL5A3P25940 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.23■□□□□ 0.99
COL5A3P25940 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
COL5A3P25940 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.23■□□□□ 0.99
COL5A3P25940 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
COL5A3P25940 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A3P25940 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
COL5A3P25940 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A3P25940 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
COL5A3P25940 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A3P25940 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC21.22■□□□□ 0.99
COL5A3P25940 RNA5SP410-201ENST00000516285 106 ntBASIC21.22■□□□□ 0.99
COL5A3P25940 TPR-209ENST00000613151 2478 ntTSL 5 BASIC21.22■□□□□ 0.99
COL5A3P25940 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A3P25940 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
COL5A3P25940 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 KRT17P7-201ENST00000451704 1104 ntBASIC21.21■□□□□ 0.99
COL5A3P25940 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC21.21■□□□□ 0.99
COL5A3P25940 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC21.21■□□□□ 0.99
COL5A3P25940 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC21.21■□□□□ 0.99
COL5A3P25940 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC21.21■□□□□ 0.99
COL5A3P25940 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A3P25940 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A3P25940 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
COL5A3P25940 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A3P25940 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A3P25940 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A3P25940 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A3P25940 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A3P25940 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A3P25940 ACA64.2-201ENST00000459014 129 ntBASIC21.21■□□□□ 0.99
COL5A3P25940 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A3P25940 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A3P25940 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC21.21■□□□□ 0.99
COL5A3P25940 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 RN7SL828P-201ENST00000607615 303 ntBASIC21.21■□□□□ 0.99
COL5A3P25940 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC21.21■□□□□ 0.99
COL5A3P25940 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC21.21■□□□□ 0.99
COL5A3P25940 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.21■□□□□ 0.99
COL5A3P25940 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL5A3P25940 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.2■□□□□ 0.99
COL5A3P25940 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
COL5A3P25940 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.2■□□□□ 0.98
COL5A3P25940 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC21.2■□□□□ 0.98
COL5A3P25940 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL5A3P25940 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms