Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.47■□□□□ 0.39
COL9A1P20849 AC004408.2-201ENST00000623613 2777 ntBASIC17.47■□□□□ 0.39
COL9A1P20849 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC17.47■□□□□ 0.39
COL9A1P20849 FLJ13224-201ENST00000313737 1514 ntBASIC17.47■□□□□ 0.39
COL9A1P20849 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL9A1P20849 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC17.47■□□□□ 0.39
COL9A1P20849 AC087289.5-201ENST00000586076 3175 ntBASIC17.46■□□□□ 0.39
COL9A1P20849 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC17.46■□□□□ 0.39
COL9A1P20849 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.46■□□□□ 0.39
COL9A1P20849 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.46■□□□□ 0.39
COL9A1P20849 ACTG1P4-201ENST00000425123 1122 ntBASIC17.46■□□□□ 0.39
COL9A1P20849 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC17.46■□□□□ 0.39
COL9A1P20849 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
COL9A1P20849 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC17.46■□□□□ 0.39
COL9A1P20849 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 REXO1L11P-201ENST00000620964 1927 ntBASIC17.46■□□□□ 0.39
COL9A1P20849 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.46■□□□□ 0.39
COL9A1P20849 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.46■□□□□ 0.39
COL9A1P20849 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL9A1P20849 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
COL9A1P20849 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
COL9A1P20849 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.46■□□□□ 0.38
COL9A1P20849 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.46■□□□□ 0.38
COL9A1P20849 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.46■□□□□ 0.38
COL9A1P20849 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL9A1P20849 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.45■□□□□ 0.38
COL9A1P20849 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL9A1P20849 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
COL9A1P20849 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC17.45■□□□□ 0.38
COL9A1P20849 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.45■□□□□ 0.38
COL9A1P20849 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.45■□□□□ 0.38
COL9A1P20849 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL9A1P20849 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL9A1P20849 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.45■□□□□ 0.38
COL9A1P20849 AC009113.1-201ENST00000570267 2443 ntBASIC17.45■□□□□ 0.38
COL9A1P20849 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.44■□□□□ 0.38
COL9A1P20849 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.44■□□□□ 0.38
COL9A1P20849 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC17.44■□□□□ 0.38
COL9A1P20849 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL9A1P20849 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.44■□□□□ 0.38
COL9A1P20849 AL583810.1-201ENST00000553344 1045 ntBASIC17.44■□□□□ 0.38
COL9A1P20849 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.44■□□□□ 0.38
COL9A1P20849 AC008735.3-201ENST00000596646 500 ntBASIC17.44■□□□□ 0.38
COL9A1P20849 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms