Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC25.27■■□□□ 1.64
RAPGEF3O95398 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RAPGEF3O95398 BCYRN1-201ENST00000418539 200 ntBASIC25.27■■□□□ 1.64
RAPGEF3O95398 AC098850.1-201ENST00000419919 790 ntBASIC25.27■■□□□ 1.64
RAPGEF3O95398 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC25.27■■□□□ 1.64
RAPGEF3O95398 MYCLP2-201ENST00000449268 967 ntBASIC25.27■■□□□ 1.64
RAPGEF3O95398 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RAPGEF3O95398 KRT18P34-201ENST00000488218 1270 ntBASIC25.27■■□□□ 1.64
RAPGEF3O95398 PRYP6-201ENST00000514804 343 ntBASIC25.27■■□□□ 1.64
RAPGEF3O95398 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RAPGEF3O95398 5S_rRNA.22-201ENST00000614916 106 ntBASIC25.27■■□□□ 1.64
RAPGEF3O95398 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC25.27■■□□□ 1.64
RAPGEF3O95398 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RAPGEF3O95398 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
RAPGEF3O95398 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RAPGEF3O95398 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 AC092933.1-201ENST00000393644 945 ntBASIC25.26■■□□□ 1.63
RAPGEF3O95398 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 MFF-223ENST00000524634 647 ntTSL 2 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 AC055876.2-201ENST00000531834 546 ntBASIC25.26■■□□□ 1.63
RAPGEF3O95398 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 MPDU1-223ENST00000582151 728 ntBASIC25.26■■□□□ 1.63
RAPGEF3O95398 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RAPGEF3O95398 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
RAPGEF3O95398 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 MIR1908-201ENST00000410394 80 ntBASIC25.25■■□□□ 1.63
RAPGEF3O95398 AC114501.2-201ENST00000439631 535 ntBASIC25.25■■□□□ 1.63
RAPGEF3O95398 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 MIR6869-201ENST00000619434 62 ntBASIC25.25■■□□□ 1.63
RAPGEF3O95398 WNT11-204ENST00000621122 789 ntTSL 5 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RAPGEF3O95398 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC25.25■■□□□ 1.63
RAPGEF3O95398 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RAPGEF3O95398 SLC9A3P2-201ENST00000447821 2021 ntBASIC25.24■■□□□ 1.63
RAPGEF3O95398 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
RAPGEF3O95398 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
RAPGEF3O95398 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 RN7SL618P-201ENST00000477850 296 ntBASIC25.24■■□□□ 1.63
RAPGEF3O95398 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
RAPGEF3O95398 AC021097.1-201ENST00000607902 574 ntBASIC25.24■■□□□ 1.63
RAPGEF3O95398 AP001350.2-201ENST00000625104 1094 ntBASIC25.24■■□□□ 1.63
RAPGEF3O95398 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RAPGEF3O95398 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RAPGEF3O95398 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC25.24■■□□□ 1.63
RAPGEF3O95398 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RAPGEF3O95398 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RAPGEF3O95398 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RAPGEF3O95398 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RAPGEF3O95398 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC25.23■■□□□ 1.63
RAPGEF3O95398 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
RAPGEF3O95398 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
RAPGEF3O95398 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RAPGEF3O95398 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RAPGEF3O95398 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC25.23■■□□□ 1.63
RAPGEF3O95398 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC25.23■■□□□ 1.63
RAPGEF3O95398 CD74-212ENST00000524315 584 ntTSL 5 BASIC25.23■■□□□ 1.63
RAPGEF3O95398 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC25.23■■□□□ 1.63
RAPGEF3O95398 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC25.23■■□□□ 1.63
RAPGEF3O95398 SRD5A3P1-201ENST00000603021 949 ntBASIC25.23■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms