Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 AC092053.1-201ENST00000605787 1936 ntBASIC16.27■□□□□ 0.2
PROM1O43490 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC16.27■□□□□ 0.2
PROM1O43490 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PROM1O43490 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.27■□□□□ 0.2
PROM1O43490 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC16.27■□□□□ 0.2
PROM1O43490 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.27■□□□□ 0.2
PROM1O43490 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 FAAHP1-202ENST00000446499 1238 ntBASIC16.27■□□□□ 0.2
PROM1O43490 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.27■□□□□ 0.2
PROM1O43490 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.27■□□□□ 0.2
PROM1O43490 AL121912.1-201ENST00000603683 238 ntBASIC16.27■□□□□ 0.2
PROM1O43490 AL353135.1-201ENST00000606729 504 ntBASIC16.27■□□□□ 0.2
PROM1O43490 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
PROM1O43490 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
PROM1O43490 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
PROM1O43490 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC16.27■□□□□ 0.2
PROM1O43490 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
PROM1O43490 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.27■□□□□ 0.19
PROM1O43490 GPR89P-201ENST00000407924 1495 ntBASIC16.27■□□□□ 0.19
PROM1O43490 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
PROM1O43490 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
PROM1O43490 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.19
PROM1O43490 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
PROM1O43490 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
PROM1O43490 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.26■□□□□ 0.19
PROM1O43490 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.26■□□□□ 0.19
PROM1O43490 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
PROM1O43490 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.26■□□□□ 0.19
PROM1O43490 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.26■□□□□ 0.19
PROM1O43490 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC16.26■□□□□ 0.19
PROM1O43490 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.26■□□□□ 0.19
PROM1O43490 AC139887.3-201ENST00000568585 713 ntBASIC16.26■□□□□ 0.19
PROM1O43490 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 AC025062.2-201ENST00000605477 670 ntBASIC16.26■□□□□ 0.19
PROM1O43490 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.26■□□□□ 0.19
PROM1O43490 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.26■□□□□ 0.19
PROM1O43490 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PROM1O43490 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.25■□□□□ 0.19
PROM1O43490 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
PROM1O43490 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PROM1O43490 AL590787.1-201ENST00000568856 1315 ntBASIC16.25■□□□□ 0.19
PROM1O43490 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.25■□□□□ 0.19
PROM1O43490 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 AC060834.1-201ENST00000443027 2032 ntBASIC16.25■□□□□ 0.19
PROM1O43490 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.25■□□□□ 0.19
PROM1O43490 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PROM1O43490 AC124947.2-201ENST00000547118 1133 ntBASIC16.25■□□□□ 0.19
PROM1O43490 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
PROM1O43490 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.25■□□□□ 0.19
PROM1O43490 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
PROM1O43490 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.25■□□□□ 0.19
PROM1O43490 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PROM1O43490 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
PROM1O43490 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PROM1O43490 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms