Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 LINC01098-201ENST00000507870 1034 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 AC008592.3-201ENST00000514941 418 ntBASIC23.57■■□□□ 1.36
MSH5O43196 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 AC010327.4-202ENST00000591484 748 ntBASIC23.57■■□□□ 1.36
MSH5O43196 BNIP3P18-201ENST00000593976 575 ntBASIC23.57■■□□□ 1.36
MSH5O43196 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC23.57■■□□□ 1.36
MSH5O43196 FAM215A-202ENST00000632077 792 ntBASIC23.57■■□□□ 1.36
MSH5O43196 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC23.57■■□□□ 1.36
MSH5O43196 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC23.57■■□□□ 1.36
MSH5O43196 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
MSH5O43196 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC23.57■■□□□ 1.36
MSH5O43196 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC23.57■■□□□ 1.36
MSH5O43196 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
MSH5O43196 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 AL118508.1-201ENST00000613502 2345 ntBASIC23.56■■□□□ 1.36
MSH5O43196 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 GNAS-203ENST00000306120 1878 ntBASIC23.56■■□□□ 1.36
MSH5O43196 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC23.56■■□□□ 1.36
MSH5O43196 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC23.56■■□□□ 1.36
MSH5O43196 AL596257.1-201ENST00000641463 2694 ntBASIC23.56■■□□□ 1.36
MSH5O43196 IL22-201ENST00000328087 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 UBE2D3-202ENST00000338145 896 ntAPPRIS ALT1 TSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 TRAF3IP3-201ENST00000367023 1065 ntTSL 3 BASIC23.56■■□□□ 1.36
MSH5O43196 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 ARPP21-217ENST00000436702 561 ntTSL 4 BASIC23.56■■□□□ 1.36
MSH5O43196 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC23.56■■□□□ 1.36
MSH5O43196 AC098831.1-202ENST00000438821 336 ntBASIC23.56■■□□□ 1.36
MSH5O43196 AL512637.1-201ENST00000439523 1231 ntBASIC23.56■■□□□ 1.36
MSH5O43196 ATP6AP2-204ENST00000447485 1254 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 USP9YP10-201ENST00000454868 628 ntBASIC23.56■■□□□ 1.36
MSH5O43196 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 USP9YP5-201ENST00000511770 630 ntBASIC23.56■■□□□ 1.36
MSH5O43196 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 AC011632.1-203ENST00000522914 454 ntTSL 3 BASIC23.56■■□□□ 1.36
MSH5O43196 AC068733.1-201ENST00000532430 1288 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH5O43196 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC23.56■■□□□ 1.36
MSH5O43196 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH5O43196 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC23.56■■□□□ 1.36
MSH5O43196 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC23.56■■□□□ 1.36
MSH5O43196 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
MSH5O43196 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC23.56■■□□□ 1.36
MSH5O43196 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH5O43196 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 PP12613-201ENST00000424958 2230 ntBASIC23.55■■□□□ 1.36
MSH5O43196 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC23.55■■□□□ 1.36
MSH5O43196 AC131097.1-201ENST00000437438 739 ntTSL 3 BASIC23.55■■□□□ 1.36
MSH5O43196 AC092106.1-201ENST00000444291 373 ntBASIC23.55■■□□□ 1.36
MSH5O43196 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC23.55■■□□□ 1.36
MSH5O43196 RAB28P2-201ENST00000454299 641 ntBASIC23.55■■□□□ 1.36
MSH5O43196 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH5O43196 RNU6-775P-201ENST00000459318 96 ntBASIC23.55■■□□□ 1.36
MSH5O43196 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC23.55■■□□□ 1.36
MSH5O43196 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC23.55■■□□□ 1.36
MSH5O43196 KLF3-AS1-205ENST00000507091 642 ntTSL 3 BASIC23.55■■□□□ 1.36
MSH5O43196 OR4A46P-201ENST00000527255 933 ntBASIC23.55■■□□□ 1.36
MSH5O43196 AC131934.1-201ENST00000527799 912 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH5O43196 AGGF1P8-201ENST00000562979 1000 ntBASIC23.55■■□□□ 1.36
MSH5O43196 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH5O43196 AC008121.2-201ENST00000614647 523 ntBASIC23.55■■□□□ 1.36
MSH5O43196 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH5O43196 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
MSH5O43196 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC23.55■■□□□ 1.36
MSH5O43196 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC23.55■■□□□ 1.36
MSH5O43196 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC23.55■■□□□ 1.36
MSH5O43196 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms