Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.69■□□□□ 0.58
CLDN3O15551 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLDN3O15551 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC18.68■□□□□ 0.58
CLDN3O15551 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
CLDN3O15551 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.68■□□□□ 0.58
CLDN3O15551 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.68■□□□□ 0.58
CLDN3O15551 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.68■□□□□ 0.58
CLDN3O15551 AL591424.1-201ENST00000442569 1213 ntBASIC18.68■□□□□ 0.58
CLDN3O15551 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLDN3O15551 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.68■□□□□ 0.58
CLDN3O15551 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.68■□□□□ 0.58
CLDN3O15551 AL671883.3-201ENST00000603274 991 ntBASIC18.68■□□□□ 0.58
CLDN3O15551 AC010654.1-201ENST00000615722 808 ntBASIC18.68■□□□□ 0.58
CLDN3O15551 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
CLDN3O15551 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
CLDN3O15551 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLDN3O15551 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLDN3O15551 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.68■□□□□ 0.58
CLDN3O15551 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLDN3O15551 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.67■□□□□ 0.58
CLDN3O15551 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
CLDN3O15551 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CLDN3O15551 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC18.67■□□□□ 0.58
CLDN3O15551 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 MIR940-201ENST00000401276 94 ntBASIC18.67■□□□□ 0.58
CLDN3O15551 MED15P5-201ENST00000423150 992 ntBASIC18.67■□□□□ 0.58
CLDN3O15551 VN2R19P-201ENST00000442399 1052 ntBASIC18.67■□□□□ 0.58
CLDN3O15551 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC18.67■□□□□ 0.58
CLDN3O15551 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
CLDN3O15551 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
CLDN3O15551 FAM197Y3-203ENST00000618346 717 ntBASIC18.67■□□□□ 0.58
CLDN3O15551 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN3O15551 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN3O15551 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.67■□□□□ 0.58
CLDN3O15551 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
CLDN3O15551 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.66■□□□□ 0.58
CLDN3O15551 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLDN3O15551 LINC02012-201ENST00000608206 1725 ntBASIC18.66■□□□□ 0.58
CLDN3O15551 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.66■□□□□ 0.58
CLDN3O15551 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CLDN3O15551 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLDN3O15551 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CLDN3O15551 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CLDN3O15551 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.66■□□□□ 0.58
CLDN3O15551 AC007967.2-201ENST00000432613 625 ntBASIC18.66■□□□□ 0.58
CLDN3O15551 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.66■□□□□ 0.58
CLDN3O15551 AC087163.2-201ENST00000457299 853 ntBASIC18.66■□□□□ 0.58
CLDN3O15551 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC18.66■□□□□ 0.58
CLDN3O15551 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.66■□□□□ 0.58
CLDN3O15551 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC18.66■□□□□ 0.58
CLDN3O15551 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC18.66■□□□□ 0.58
CLDN3O15551 AC140113.2-201ENST00000604370 208 ntBASIC18.66■□□□□ 0.58
CLDN3O15551 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLDN3O15551 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.66■□□□□ 0.58
CLDN3O15551 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CLDN3O15551 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.66■□□□□ 0.58
CLDN3O15551 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CLDN3O15551 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms