Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 MINOS1P3-201ENST00000457048 203 ntBASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 AC096582.2-201ENST00000510860 516 ntBASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 LINC00895-201ENST00000629028 1637 ntBASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMA1Q9UHB6 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 SIGLEC16-201ENST00000599858 1437 ntBASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 TOB2P1-201ENST00000469761 992 ntBASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMA1Q9UHB6 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AL513523.2-202ENST00000427283 2040 ntBASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AC114341.1-201ENST00000618070 349 ntBASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 AC073592.4-201ENST00000623827 446 ntBASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMA1Q9UHB6 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms