Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 MKNK2P1-201ENST00000437526 628 ntBASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLCF1Q9UBD9 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 HTR5BP-201ENST00000430851 1154 ntBASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AL513480.1-201ENST00000451731 511 ntBASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AC074386.1-202ENST00000463561 864 ntBASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AL078644.1-201ENST00000609881 752 ntBASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AC134684.3-201ENST00000641758 218 ntBASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AC007613.1-201ENST00000572811 2597 ntBASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 AC116353.5-201ENST00000638148 1699 ntBASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
CLCF1Q9UBD9 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 AC093525.9-201ENST00000624961 1746 ntBASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 AC211486.1-202ENST00000416371 468 ntBASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 AP006288.1-201ENST00000446065 395 ntBASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 AC211476.1-201ENST00000503899 468 ntBASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 MIR4469-201ENST00000583919 79 ntBASIC15.18■□□□□ 0.02
CLCF1Q9UBD9 AC068137.2-201ENST00000605408 478 ntBASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms