Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.86■■□□□ 1.09
SHANK3Q9BYB0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 CU639417.3-201ENST00000624240 1404 ntBASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 CR383656.12-201ENST00000549567 513 ntBASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 EMC4-203ENST00000557879 1009 ntTSL 3 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 AL358472.5-202ENST00000641448 1267 ntBASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SHANK3Q9BYB0 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 GRAMD4P3-201ENST00000621665 1669 ntBASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SHANK3Q9BYB0 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 ZNF890P-202ENST00000530367 1156 ntBASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 ARL16-202ENST00000570561 768 ntTSL 2 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SHANK3Q9BYB0 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 HLA-V-204ENST00000476601 1289 ntBASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
SHANK3Q9BYB0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 AL138688.1-201ENST00000624851 1594 ntBASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 AC073439.1-201ENST00000624121 1774 ntBASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 AL512361.1-201ENST00000554200 418 ntBASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 AC021097.1-201ENST00000607902 574 ntBASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 AC003101.2-201ENST00000612557 442 ntBASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 TPR-209ENST00000613151 2478 ntTSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SHANK3Q9BYB0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC21.81■■□□□ 1.08
SHANK3Q9BYB0 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms