Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 ARL16-210ENST00000574938 751 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 BTBD7P1-201ENST00000447253 1453 ntBASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 AP3S2-216ENST00000617003 1561 ntBASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 BX323043.1-201ENST00000641006 1765 ntBASIC20.16■□□□□ 0.82
SMC1BQ8NDV3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AL049812.1-201ENST00000432563 2267 ntBASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 SPDYE19P-201ENST00000338590 713 ntBASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 BOLA2P3-201ENST00000404566 256 ntBASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AC244093.1-201ENST00000610837 814 ntBASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 CETN4P-206ENST00000642099 2168 ntBASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
SMC1BQ8NDV3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SMC1BQ8NDV3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.82
SMC1BQ8NDV3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 EFTUD1P1-204ENST00000560401 1798 ntBASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 PHGDH-209ENST00000641074 1780 ntBASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 MIR1908-201ENST00000410394 80 ntBASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 DOC2GP-202ENST00000514950 1163 ntBASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 AC104989.1-201ENST00000519711 778 ntBASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
SMC1BQ8NDV3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
SMC1BQ8NDV3 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC20.12■□□□□ 0.81
SMC1BQ8NDV3 TMEM14DP-201ENST00000422205 345 ntBASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms