Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 PP14571-201ENST00000404327 934 ntTSL 2 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 GIMAP3P-201ENST00000495150 836 ntBASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 SLC25A24-204ENST00000569674 2357 ntBASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC22.9■■□□□ 1.26
KRT28Q7Z3Y7 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
KRT28Q7Z3Y7 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 DGCR5-201ENST00000399539 862 ntBASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 RPL37AP1-201ENST00000412502 279 ntBASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 RAB34-223ENST00000636154 730 ntTSL 2 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 AL035456.1-201ENST00000456064 1369 ntBASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
KRT28Q7Z3Y7 AC090164.3-201ENST00000610780 2143 ntBASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 AC098614.1-201ENST00000368528 745 ntBASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 RNA5-8SN1-201ENST00000610460 153 ntBASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 RNA5-8SN5-202ENST00000612463 153 ntBASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 RNA5-8SN4-201ENST00000613359 153 ntBASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 RNA5-8SN5-201ENST00000619471 153 ntBASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC22.88■■□□□ 1.25
KRT28Q7Z3Y7 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 AL138781.2-201ENST00000617896 1843 ntBASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 LINC00895-201ENST00000629028 1637 ntBASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 INE1-201ENST00000456273 945 ntBASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 AC021097.1-201ENST00000607902 574 ntBASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 LINC00896-202ENST00000609602 2128 ntBASIC22.87■■□□□ 1.25
KRT28Q7Z3Y7 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms