Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 AC093520.2-201ENST00000561830 333 ntBASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 EGFEM1P-202ENST00000431685 1563 ntBASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.36■□□□□ 0.05
RNFT1Q5M7Z0 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 CBR1-202ENST00000399191 838 ntTSL 3 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 AC109322.1-201ENST00000524499 1264 ntBASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
RNFT1Q5M7Z0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC018470.1-201ENST00000624790 3129 ntBASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 IFNA4-201ENST00000421715 978 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 HLA-J-203ENST00000494367 1087 ntBASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC005412.3-201ENST00000580309 715 ntBASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC026120.1-201ENST00000611536 926 ntBASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 Z99916.3-201ENST00000623422 1080 ntBASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 AC093525.9-201ENST00000624961 1746 ntBASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
RNFT1Q5M7Z0 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
RNFT1Q5M7Z0 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC15.33■□□□□ 0.05
RNFT1Q5M7Z0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC15.33■□□□□ 0.05
RNFT1Q5M7Z0 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms