Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC17.89■□□□□ 0.45
CHD9Q3L8U1 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.88■□□□□ 0.45
CHD9Q3L8U1 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AL133338.1-201ENST00000565695 1517 ntBASIC17.88■□□□□ 0.45
CHD9Q3L8U1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 PRR29-204ENST00000577953 565 ntTSL 4 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AC091167.2-201ENST00000579581 588 ntBASIC17.88■□□□□ 0.45
CHD9Q3L8U1 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AC008735.3-201ENST00000596646 500 ntBASIC17.88■□□□□ 0.45
CHD9Q3L8U1 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 FAM8A2P-201ENST00000528813 1142 ntBASIC17.88■□□□□ 0.45
CHD9Q3L8U1 AC003101.2-201ENST00000612557 442 ntBASIC17.88■□□□□ 0.45
CHD9Q3L8U1 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
CHD9Q3L8U1 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 AL589739.1-201ENST00000607720 493 ntBASIC17.87■□□□□ 0.45
CHD9Q3L8U1 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.87■□□□□ 0.45
CHD9Q3L8U1 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 LINC00895-201ENST00000629028 1637 ntBASIC17.86■□□□□ 0.45
CHD9Q3L8U1 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 AC098850.1-201ENST00000419919 790 ntBASIC17.86■□□□□ 0.45
CHD9Q3L8U1 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
CHD9Q3L8U1 LINC00304-203ENST00000565008 1864 ntBASIC17.86■□□□□ 0.45
CHD9Q3L8U1 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 LYSMD4-203ENST00000378904 2122 ntBASIC17.85■□□□□ 0.45
CHD9Q3L8U1 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.85■□□□□ 0.45
CHD9Q3L8U1 ORC6-206ENST00000568364 888 ntTSL 5 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms