Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 AL512361.1-201ENST00000554200 418 ntBASIC10.43□□□□□ -0.74
HSPG2P98160 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC10.43□□□□□ -0.74
HSPG2P98160 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC10.43□□□□□ -0.74
HSPG2P98160 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC10.43□□□□□ -0.74
HSPG2P98160 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC10.43□□□□□ -0.74
HSPG2P98160 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC10.43□□□□□ -0.74
HSPG2P98160 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 RPL7P3-201ENST00000441388 714 ntBASIC10.43□□□□□ -0.74
HSPG2P98160 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC10.43□□□□□ -0.74
HSPG2P98160 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 HARS-204ENST00000438307 1789 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 GGCT-203ENST00000409144 836 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC10.43□□□□□ -0.74
HSPG2P98160 SRD5A3P1-201ENST00000603021 949 ntBASIC10.43□□□□□ -0.74
HSPG2P98160 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC10.43□□□□□ -0.74
HSPG2P98160 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
HSPG2P98160 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC10.43□□□□□ -0.74
HSPG2P98160 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 LDHBP1-201ENST00000455730 1119 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 AC005412.3-201ENST00000580309 715 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 AL033527.5-201ENST00000641382 801 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 AC073592.3-201ENST00000625118 1834 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC10.42□□□□□ -0.74
HSPG2P98160 MPV17-206ENST00000402722 827 ntTSL 3 BASIC10.42□□□□□ -0.74
HSPG2P98160 GPAA1P2-201ENST00000417923 928 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC10.42□□□□□ -0.74
HSPG2P98160 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC10.42□□□□□ -0.74
HSPG2P98160 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
HSPG2P98160 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC10.42□□□□□ -0.74
HSPG2P98160 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 LINC00895-201ENST00000629028 1637 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 AC104457.1-201ENST00000401024 814 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 AC114501.2-201ENST00000439631 535 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 KRT8P13-201ENST00000463294 1010 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 PRYP6-201ENST00000514804 343 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC10.42□□□□□ -0.74
HSPG2P98160 NEU3-203ENST00000529024 581 ntTSL 3 BASIC10.42□□□□□ -0.74
HSPG2P98160 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC10.42□□□□□ -0.74
HSPG2P98160 MIR4706-201ENST00000582134 82 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC10.42□□□□□ -0.74
HSPG2P98160 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 FAM86HP-204ENST00000513466 959 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 ACTG1P17-201ENST00000558391 1119 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
HSPG2P98160 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC10.42□□□□□ -0.74
HSPG2P98160 WFDC1-204ENST00000613603 549 ntBASIC10.42□□□□□ -0.74
HSPG2P98160 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
HSPG2P98160 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC10.42□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms