Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
PRKDCP78527 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.18□□□□□ -0.46
PRKDCP78527 AL512361.1-201ENST00000554200 418 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 MIR5189-201ENST00000577370 114 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC12.18□□□□□ -0.46
PRKDCP78527 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC12.18□□□□□ -0.46
PRKDCP78527 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
PRKDCP78527 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC12.18□□□□□ -0.46
PRKDCP78527 AL035456.1-201ENST00000456064 1369 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC12.18□□□□□ -0.46
PRKDCP78527 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 TPRX2P-201ENST00000535362 881 ntBASIC12.18□□□□□ -0.46
PRKDCP78527 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
PRKDCP78527 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 AC114501.2-201ENST00000439631 535 ntBASIC12.17□□□□□ -0.46
PRKDCP78527 IGHV3-52-201ENST00000519770 353 ntBASIC12.17□□□□□ -0.46
PRKDCP78527 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.17□□□□□ -0.46
PRKDCP78527 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC12.17□□□□□ -0.46
PRKDCP78527 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.17□□□□□ -0.46
PRKDCP78527 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.17□□□□□ -0.46
PRKDCP78527 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
PRKDCP78527 AC007969.1-201ENST00000433675 447 ntBASIC12.17□□□□□ -0.46
PRKDCP78527 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC12.17□□□□□ -0.46
PRKDCP78527 AC105021.1-202ENST00000570572 669 ntBASIC12.17□□□□□ -0.46
PRKDCP78527 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.17□□□□□ -0.46
PRKDCP78527 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
PRKDCP78527 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC12.17□□□□□ -0.46
PRKDCP78527 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC12.17□□□□□ -0.46
PRKDCP78527 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC12.17□□□□□ -0.46
PRKDCP78527 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 SLC25A47P1-201ENST00000531577 414 ntBASIC12.16□□□□□ -0.46
PRKDCP78527 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 AL627389.1-201ENST00000413508 1182 ntBASIC12.16□□□□□ -0.46
PRKDCP78527 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
PRKDCP78527 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
PRKDCP78527 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.16□□□□□ -0.46
PRKDCP78527 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC12.16□□□□□ -0.46
PRKDCP78527 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC12.16□□□□□ -0.46
PRKDCP78527 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms