Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.85■□□□□ 0.13
RNF4P78317 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
RNF4P78317 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.85■□□□□ 0.13
RNF4P78317 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
RNF4P78317 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 MED15P5-201ENST00000423150 992 ntBASIC15.85■□□□□ 0.13
RNF4P78317 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
RNF4P78317 AC140113.2-201ENST00000604370 208 ntBASIC15.85■□□□□ 0.13
RNF4P78317 AC010654.1-201ENST00000615722 808 ntBASIC15.85■□□□□ 0.13
RNF4P78317 FAM197Y3-203ENST00000618346 717 ntBASIC15.85■□□□□ 0.13
RNF4P78317 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
RNF4P78317 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
RNF4P78317 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
RNF4P78317 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC15.85■□□□□ 0.13
RNF4P78317 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
RNF4P78317 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
RNF4P78317 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 MIR940-201ENST00000401276 94 ntBASIC15.84■□□□□ 0.13
RNF4P78317 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.84■□□□□ 0.13
RNF4P78317 AC007967.2-201ENST00000432613 625 ntBASIC15.84■□□□□ 0.13
RNF4P78317 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.84■□□□□ 0.13
RNF4P78317 VN2R19P-201ENST00000442399 1052 ntBASIC15.84■□□□□ 0.13
RNF4P78317 AC087163.2-201ENST00000457299 853 ntBASIC15.84■□□□□ 0.13
RNF4P78317 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.84■□□□□ 0.13
RNF4P78317 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.84■□□□□ 0.13
RNF4P78317 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.84■□□□□ 0.13
RNF4P78317 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.84■□□□□ 0.13
RNF4P78317 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC15.84■□□□□ 0.13
RNF4P78317 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
RNF4P78317 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.84■□□□□ 0.13
RNF4P78317 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
RNF4P78317 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.83■□□□□ 0.13
RNF4P78317 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
RNF4P78317 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
RNF4P78317 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC15.83■□□□□ 0.13
RNF4P78317 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
RNF4P78317 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
RNF4P78317 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
RNF4P78317 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
RNF4P78317 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
RNF4P78317 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
RNF4P78317 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.83■□□□□ 0.12
RNF4P78317 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 KRT18P3-201ENST00000451602 1288 ntBASIC15.83■□□□□ 0.12
RNF4P78317 POLD2P1-201ENST00000511220 997 ntBASIC15.83■□□□□ 0.12
RNF4P78317 OR7E47P-204ENST00000575924 449 ntBASIC15.83■□□□□ 0.12
RNF4P78317 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
RNF4P78317 AC064836.3-201ENST00000607928 673 ntBASIC15.83■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms