Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 AC009949.1-201ENST00000623048 1830 ntBASIC14.29□□□□□ -0.12
HOXA1P49639 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.29□□□□□ -0.12
HOXA1P49639 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.29□□□□□ -0.12
HOXA1P49639 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
HOXA1P49639 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HOXA1P49639 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXA1P49639 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
HOXA1P49639 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXA1P49639 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA1P49639 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA1P49639 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 AL513523.2-202ENST00000427283 2040 ntBASIC14.28□□□□□ -0.12
HOXA1P49639 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXA1P49639 AC008550.1-201ENST00000511500 884 ntBASIC14.28□□□□□ -0.12
HOXA1P49639 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXA1P49639 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA1P49639 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA1P49639 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXA1P49639 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
HOXA1P49639 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
HOXA1P49639 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
HOXA1P49639 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
HOXA1P49639 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXA1P49639 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA1P49639 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA1P49639 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXA1P49639 AC126177.1-201ENST00000547829 2218 ntBASIC14.27□□□□□ -0.12
HOXA1P49639 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA1P49639 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
HOXA1P49639 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA1P49639 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXA1P49639 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA1P49639 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
HOXA1P49639 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC14.27□□□□□ -0.12
HOXA1P49639 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HOXA1P49639 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
HOXA1P49639 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXA1P49639 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
HOXA1P49639 AP000523.1-201ENST00000398242 1049 ntBASIC14.27□□□□□ -0.13
HOXA1P49639 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC14.27□□□□□ -0.13
HOXA1P49639 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC14.27□□□□□ -0.13
HOXA1P49639 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXA1P49639 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXA1P49639 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC14.27□□□□□ -0.13
HOXA1P49639 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 LINC01451-201ENST00000623792 534 ntBASIC14.27□□□□□ -0.13
HOXA1P49639 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXA1P49639 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HOXA1P49639 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HOXA1P49639 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
HOXA1P49639 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HOXA1P49639 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms