Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 AP002414.3-201ENST00000589352 1468 ntBASIC17.78■□□□□ 0.44
PTPN9P43378 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC17.78■□□□□ 0.44
PTPN9P43378 AC087163.2-201ENST00000457299 853 ntBASIC17.78■□□□□ 0.44
PTPN9P43378 RNA5SP419-201ENST00000515908 135 ntBASIC17.78■□□□□ 0.44
PTPN9P43378 SLC25A6P4-201ENST00000586535 553 ntBASIC17.78■□□□□ 0.44
PTPN9P43378 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 AC008667.4-201ENST00000607370 168 ntBASIC17.78■□□□□ 0.44
PTPN9P43378 MIR7706-201ENST00000613747 67 ntBASIC17.78■□□□□ 0.44
PTPN9P43378 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC17.78■□□□□ 0.44
PTPN9P43378 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PTPN9P43378 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
PTPN9P43378 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTPN9P43378 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTPN9P43378 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.77■□□□□ 0.44
PTPN9P43378 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PTPN9P43378 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
PTPN9P43378 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.77■□□□□ 0.44
PTPN9P43378 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.44
PTPN9P43378 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.77■□□□□ 0.44
PTPN9P43378 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PTPN9P43378 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.77■□□□□ 0.44
PTPN9P43378 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.77■□□□□ 0.44
PTPN9P43378 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.77■□□□□ 0.44
PTPN9P43378 AL662844.1-201ENST00000546340 181 ntBASIC17.77■□□□□ 0.44
PTPN9P43378 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
PTPN9P43378 GGTLC5P-201ENST00000617623 998 ntBASIC17.77■□□□□ 0.44
PTPN9P43378 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTPN9P43378 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN9P43378 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.77■□□□□ 0.43
PTPN9P43378 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN9P43378 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.77■□□□□ 0.43
PTPN9P43378 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN9P43378 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN9P43378 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN9P43378 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN9P43378 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
PTPN9P43378 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.76■□□□□ 0.43
PTPN9P43378 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
PTPN9P43378 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 KRT8P49-201ENST00000604166 1432 ntBASIC17.76■□□□□ 0.43
PTPN9P43378 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
PTPN9P43378 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN9P43378 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.76■□□□□ 0.43
PTPN9P43378 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 IGHV3-65-201ENST00000523210 341 ntBASIC17.76■□□□□ 0.43
PTPN9P43378 AP002490.2-201ENST00000524791 560 ntBASIC17.76■□□□□ 0.43
PTPN9P43378 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN9P43378 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.76■□□□□ 0.43
PTPN9P43378 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN9P43378 AL049840.3-201ENST00000602669 611 ntBASIC17.76■□□□□ 0.43
PTPN9P43378 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN9P43378 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN9P43378 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC17.76■□□□□ 0.43
PTPN9P43378 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.76■□□□□ 0.43
PTPN9P43378 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC17.76■□□□□ 0.43
PTPN9P43378 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.76■□□□□ 0.43
PTPN9P43378 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
PTPN9P43378 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms