Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC22.28■■□□□ 1.16
COL18A1P39060 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
COL18A1P39060 STX3-203ENST00000529177 1571 ntTSL 2 BASIC22.28■■□□□ 1.16
COL18A1P39060 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
COL18A1P39060 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC22.27■■□□□ 1.16
COL18A1P39060 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 KRT18P34-201ENST00000488218 1270 ntBASIC22.27■■□□□ 1.16
COL18A1P39060 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC22.27■■□□□ 1.16
COL18A1P39060 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC22.27■■□□□ 1.16
COL18A1P39060 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 AC087499.5-201ENST00000452760 1342 ntBASIC22.27■■□□□ 1.16
COL18A1P39060 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
COL18A1P39060 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC22.27■■□□□ 1.16
COL18A1P39060 ATP5G2P4-201ENST00000442175 420 ntBASIC22.27■■□□□ 1.16
COL18A1P39060 IGHV3-71-201ENST00000523324 359 ntBASIC22.27■■□□□ 1.16
COL18A1P39060 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
COL18A1P39060 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC22.27■■□□□ 1.16
COL18A1P39060 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC22.27■■□□□ 1.16
COL18A1P39060 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC22.26■■□□□ 1.15
COL18A1P39060 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC22.26■■□□□ 1.15
COL18A1P39060 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
COL18A1P39060 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
COL18A1P39060 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 AC104794.3-201ENST00000566840 1248 ntBASIC22.26■■□□□ 1.15
COL18A1P39060 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 AC073439.1-201ENST00000624121 1774 ntBASIC22.26■■□□□ 1.15
COL18A1P39060 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
COL18A1P39060 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
COL18A1P39060 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
COL18A1P39060 SPDYE18-201ENST00000510091 1050 ntBASIC22.25■■□□□ 1.15
COL18A1P39060 HILS1-202ENST00000545329 423 ntBASIC22.25■■□□□ 1.15
COL18A1P39060 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC22.25■■□□□ 1.15
COL18A1P39060 SSH2-210ENST00000582084 560 ntTSL 3 BASIC22.25■■□□□ 1.15
COL18A1P39060 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC22.25■■□□□ 1.15
COL18A1P39060 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
COL18A1P39060 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
COL18A1P39060 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
COL18A1P39060 CETN4P-206ENST00000642099 2168 ntBASIC22.25■■□□□ 1.15
COL18A1P39060 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC22.25■■□□□ 1.15
COL18A1P39060 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC22.25■■□□□ 1.15
COL18A1P39060 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC22.25■■□□□ 1.15
COL18A1P39060 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
COL18A1P39060 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC22.25■■□□□ 1.15
COL18A1P39060 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 ARSEP1-201ENST00000420443 635 ntBASIC22.25■■□□□ 1.15
COL18A1P39060 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC22.25■■□□□ 1.15
COL18A1P39060 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC22.25■■□□□ 1.15
COL18A1P39060 AL512361.1-201ENST00000554200 418 ntBASIC22.25■■□□□ 1.15
COL18A1P39060 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC22.25■■□□□ 1.15
COL18A1P39060 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC22.25■■□□□ 1.15
COL18A1P39060 AP001350.2-201ENST00000625104 1094 ntBASIC22.25■■□□□ 1.15
COL18A1P39060 AC108860.2-201ENST00000562760 2183 ntBASIC22.25■■□□□ 1.15
COL18A1P39060 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
COL18A1P39060 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC22.24■■□□□ 1.15
COL18A1P39060 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC22.24■■□□□ 1.15
COL18A1P39060 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
COL18A1P39060 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC22.24■■□□□ 1.15
COL18A1P39060 CENPM-206ENST00000407253 818 ntTSL 2 BASIC22.24■■□□□ 1.15
COL18A1P39060 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC22.24■■□□□ 1.15
COL18A1P39060 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC22.24■■□□□ 1.15
COL18A1P39060 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC22.24■■□□□ 1.15
COL18A1P39060 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
COL18A1P39060 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC22.24■■□□□ 1.15
COL18A1P39060 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC22.24■■□□□ 1.15
COL18A1P39060 ARL16-202ENST00000570561 768 ntTSL 2 BASIC22.24■■□□□ 1.15
COL18A1P39060 LITAF-210ENST00000571976 548 ntTSL 2 BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms