Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC092933.1-201ENST00000393644 945 ntBASIC20.5■□□□□ 0.87
BRCA1P38398 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.5■□□□□ 0.87
BRCA1P38398 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
BRCA1P38398 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 FTH1-202ENST00000526640 786 ntTSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC20.5■□□□□ 0.87
BRCA1P38398 AC021097.1-201ENST00000607902 574 ntBASIC20.5■□□□□ 0.87
BRCA1P38398 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC20.5■□□□□ 0.87
BRCA1P38398 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
BRCA1P38398 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
BRCA1P38398 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC20.5■□□□□ 0.87
BRCA1P38398 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.5■□□□□ 0.87
BRCA1P38398 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
BRCA1P38398 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 PARP8-218ENST00000513738 596 ntTSL 4 BASIC20.5■□□□□ 0.87
BRCA1P38398 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
BRCA1P38398 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
BRCA1P38398 RPS19-201ENST00000221975 500 ntTSL 3 BASIC20.49■□□□□ 0.87
BRCA1P38398 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
BRCA1P38398 AC133552.6-201ENST00000613406 534 ntBASIC20.49■□□□□ 0.87
BRCA1P38398 WFDC1-204ENST00000613603 549 ntBASIC20.49■□□□□ 0.87
BRCA1P38398 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
BRCA1P38398 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC20.49■□□□□ 0.87
BRCA1P38398 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.48■□□□□ 0.87
BRCA1P38398 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC20.48■□□□□ 0.87
BRCA1P38398 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.48■□□□□ 0.87
BRCA1P38398 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.48■□□□□ 0.87
BRCA1P38398 SLC9A3P2-201ENST00000447821 2021 ntBASIC20.48■□□□□ 0.87
BRCA1P38398 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.48■□□□□ 0.87
BRCA1P38398 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC20.48■□□□□ 0.87
BRCA1P38398 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC20.48■□□□□ 0.87
BRCA1P38398 AC104989.1-201ENST00000519711 778 ntBASIC20.48■□□□□ 0.87
BRCA1P38398 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.48■□□□□ 0.87
BRCA1P38398 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 TOP3BP1-201ENST00000420768 1380 ntBASIC20.48■□□□□ 0.87
BRCA1P38398 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC20.48■□□□□ 0.87
BRCA1P38398 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.48■□□□□ 0.87
BRCA1P38398 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC20.48■□□□□ 0.87
BRCA1P38398 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.48■□□□□ 0.87
BRCA1P38398 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
BRCA1P38398 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
BRCA1P38398 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.48■□□□□ 0.87
BRCA1P38398 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
BRCA1P38398 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.47■□□□□ 0.87
BRCA1P38398 SIGLEC29P-201ENST00000599873 1114 ntBASIC20.47■□□□□ 0.87
BRCA1P38398 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC20.47■□□□□ 0.87
BRCA1P38398 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.47■□□□□ 0.87
BRCA1P38398 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
BRCA1P38398 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms