Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CIITAP33076 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.23■□□□□ 0.67
CIITAP33076 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CIITAP33076 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CIITAP33076 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.23■□□□□ 0.67
CIITAP33076 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC19.23■□□□□ 0.67
CIITAP33076 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.23■□□□□ 0.67
CIITAP33076 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
CIITAP33076 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CIITAP33076 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.22■□□□□ 0.67
CIITAP33076 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CIITAP33076 AL021920.2-201ENST00000624828 1351 ntBASIC19.22■□□□□ 0.67
CIITAP33076 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.22■□□□□ 0.67
CIITAP33076 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CIITAP33076 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.22■□□□□ 0.67
CIITAP33076 AC004832.2-201ENST00000426397 482 ntBASIC19.22■□□□□ 0.67
CIITAP33076 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC19.22■□□□□ 0.67
CIITAP33076 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.22■□□□□ 0.67
CIITAP33076 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC19.22■□□□□ 0.67
CIITAP33076 AC005412.3-201ENST00000580309 715 ntBASIC19.22■□□□□ 0.67
CIITAP33076 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.22■□□□□ 0.67
CIITAP33076 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 AC004877.2-201ENST00000623941 599 ntBASIC19.22■□□□□ 0.67
CIITAP33076 AC092865.6-201ENST00000642101 219 ntBASIC19.22■□□□□ 0.67
CIITAP33076 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC19.22■□□□□ 0.67
CIITAP33076 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC19.22■□□□□ 0.67
CIITAP33076 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
CIITAP33076 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CIITAP33076 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.21■□□□□ 0.67
CIITAP33076 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CIITAP33076 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CIITAP33076 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC19.21■□□□□ 0.67
CIITAP33076 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.21■□□□□ 0.67
CIITAP33076 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.21■□□□□ 0.67
CIITAP33076 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.21■□□□□ 0.67
CIITAP33076 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CIITAP33076 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC19.21■□□□□ 0.67
CIITAP33076 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
CIITAP33076 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.21■□□□□ 0.67
CIITAP33076 KRT19P2-202ENST00000557173 1012 ntBASIC19.21■□□□□ 0.67
CIITAP33076 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CIITAP33076 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
CIITAP33076 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
CIITAP33076 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.21■□□□□ 0.67
CIITAP33076 AC023141.13-201ENST00000604991 943 ntBASIC19.21■□□□□ 0.67
CIITAP33076 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.21■□□□□ 0.67
CIITAP33076 AC007064.4-201ENST00000637740 555 ntBASIC19.21■□□□□ 0.67
CIITAP33076 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CIITAP33076 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC19.2■□□□□ 0.66
CIITAP33076 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
CIITAP33076 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.2■□□□□ 0.66
CIITAP33076 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CIITAP33076 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CIITAP33076 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
CIITAP33076 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.2■□□□□ 0.66
CIITAP33076 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.2■□□□□ 0.66
CIITAP33076 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CIITAP33076 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.2■□□□□ 0.66
CIITAP33076 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms