Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 HNRNPDP1-201ENST00000439535 754 ntBASIC17.13■□□□□ 0.33
XRCC1P18887 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.13■□□□□ 0.33
XRCC1P18887 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.13■□□□□ 0.33
XRCC1P18887 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC17.13■□□□□ 0.33
XRCC1P18887 AC019129.2-201ENST00000609837 1235 ntBASIC17.13■□□□□ 0.33
XRCC1P18887 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 BX640515.1-201ENST00000617215 977 ntBASIC17.13■□□□□ 0.33
XRCC1P18887 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.13■□□□□ 0.33
XRCC1P18887 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.13■□□□□ 0.33
XRCC1P18887 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.13■□□□□ 0.33
XRCC1P18887 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
XRCC1P18887 LINC00304-203ENST00000565008 1864 ntBASIC17.13■□□□□ 0.33
XRCC1P18887 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.13■□□□□ 0.33
XRCC1P18887 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
XRCC1P18887 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
XRCC1P18887 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.12■□□□□ 0.33
XRCC1P18887 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 MTDHP4-201ENST00000600287 670 ntBASIC17.12■□□□□ 0.33
XRCC1P18887 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
XRCC1P18887 FAM215A-202ENST00000632077 792 ntBASIC17.12■□□□□ 0.33
XRCC1P18887 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.12■□□□□ 0.33
XRCC1P18887 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
XRCC1P18887 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.12■□□□□ 0.33
XRCC1P18887 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC17.11■□□□□ 0.33
XRCC1P18887 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
XRCC1P18887 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
XRCC1P18887 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
XRCC1P18887 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 SPDYE21P-201ENST00000413323 827 ntBASIC17.11■□□□□ 0.33
XRCC1P18887 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.11■□□□□ 0.33
XRCC1P18887 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 AC025062.2-201ENST00000605477 670 ntBASIC17.11■□□□□ 0.33
XRCC1P18887 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.11■□□□□ 0.33
XRCC1P18887 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.11■□□□□ 0.33
XRCC1P18887 AL022326.1-202ENST00000641533 845 ntBASIC17.11■□□□□ 0.33
XRCC1P18887 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
XRCC1P18887 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms