Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
VPS4BO75351 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4BO75351 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
VPS4BO75351 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4BO75351 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS4BO75351 FAM220CP-201ENST00000395253 831 ntBASIC16.84■□□□□ 0.29
VPS4BO75351 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
VPS4BO75351 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
VPS4BO75351 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.84■□□□□ 0.29
VPS4BO75351 KRT18P58-201ENST00000527480 1120 ntBASIC16.84■□□□□ 0.29
VPS4BO75351 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC16.84■□□□□ 0.29
VPS4BO75351 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
VPS4BO75351 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4BO75351 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
VPS4BO75351 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.84■□□□□ 0.29
VPS4BO75351 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4BO75351 IL9RP2-201ENST00000423948 1312 ntBASIC16.84■□□□□ 0.29
VPS4BO75351 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4BO75351 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4BO75351 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.84■□□□□ 0.29
VPS4BO75351 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 PCDHA14-201ENST00000506751 2298 ntBASIC16.84■□□□□ 0.29
VPS4BO75351 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
VPS4BO75351 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.84■□□□□ 0.29
VPS4BO75351 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
VPS4BO75351 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
VPS4BO75351 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
VPS4BO75351 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.83■□□□□ 0.29
VPS4BO75351 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4BO75351 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
VPS4BO75351 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS4BO75351 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
VPS4BO75351 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4BO75351 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS4BO75351 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4BO75351 VENTXP7-201ENST00000475503 772 ntBASIC16.83■□□□□ 0.28
VPS4BO75351 AC093909.1-201ENST00000504731 1122 ntBASIC16.83■□□□□ 0.28
VPS4BO75351 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.83■□□□□ 0.28
VPS4BO75351 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
VPS4BO75351 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
VPS4BO75351 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
VPS4BO75351 AC233702.3-201ENST00000578656 1387 ntBASIC16.83■□□□□ 0.28
VPS4BO75351 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS4BO75351 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.83■□□□□ 0.28
VPS4BO75351 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS4BO75351 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
VPS4BO75351 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS4BO75351 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS4BO75351 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
VPS4BO75351 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS4BO75351 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 AC010460.3-201ENST00000511359 1579 ntBASIC16.82■□□□□ 0.28
VPS4BO75351 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VPS4BO75351 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4BO75351 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4BO75351 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4BO75351 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS4BO75351 AC005332.3-201ENST00000589904 676 ntBASIC16.82■□□□□ 0.28
VPS4BO75351 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS4BO75351 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS4BO75351 AL773604.1-201ENST00000617417 272 ntBASIC16.82■□□□□ 0.28
VPS4BO75351 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS4BO75351 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms