Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 SPDYE18-201ENST00000510091 1050 ntBASIC13.1□□□□□ -0.31
COL6A5A8TX70 AP000812.2-201ENST00000538934 718 ntBASIC13.1□□□□□ -0.31
COL6A5A8TX70 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
COL6A5A8TX70 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.1□□□□□ -0.31
COL6A5A8TX70 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 HLA-H-201ENST00000383620 1096 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 RPL13AP20-201ENST00000459725 609 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 RRP7BP-205ENST00000566851 833 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 LINC00896-202ENST00000609602 2128 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 USP39-202ENST00000409025 1946 ntTSL 5 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC002558.1-201ENST00000488906 803 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC093726.1-201ENST00000608064 963 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 U62317.3-201ENST00000608319 855 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC046185.3-201ENST00000623228 1824 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 SLC25A24P2-201ENST00000415059 510 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 KRT18P34-201ENST00000488218 1270 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 AP001258.2-201ENST00000529891 490 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC13.09□□□□□ -0.31
COL6A5A8TX70 AC091167.2-201ENST00000579581 588 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 MIR5572-201ENST00000583188 137 ntBASIC13.09□□□□□ -0.31
COL6A5A8TX70 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
COL6A5A8TX70 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
COL6A5A8TX70 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC13.08□□□□□ -0.31
COL6A5A8TX70 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC13.08□□□□□ -0.31
COL6A5A8TX70 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.31
COL6A5A8TX70 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC126763.1-201ENST00000552015 2118 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 ACTG1P17-201ENST00000558391 1119 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 MIR7845-201ENST00000618396 99 ntBASIC13.08□□□□□ -0.32
COL6A5A8TX70 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 EFS-203ENST00000429593 2610 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC13.08□□□□□ -0.32
COL6A5A8TX70 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL6A5A8TX70 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms