Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 RCN1P2-201ENST00000398357 915 ntBASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 DRAXINP1-201ENST00000437611 948 ntBASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 AP002383.4-201ENST00000442518 975 ntBASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 SIGLEC30P-201ENST00000455569 941 ntBASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 TPSP2-201ENST00000561760 610 ntBASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 KRT18P1-202ENST00000452408 1331 ntBASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LIMA1Q9UHB6 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 AL020989.1-201ENST00000422979 469 ntBASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 AC116407.4-201ENST00000623319 1061 ntBASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
LIMA1Q9UHB6 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AP002414.1-201ENST00000391405 1147 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 SPDYE21P-201ENST00000413323 827 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 IGHV3-47-201ENST00000425060 335 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 TSSC2-201ENST00000450217 709 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 KRT17P6-201ENST00000453795 1220 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 Z69720.1-201ENST00000601483 472 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AC004817.3-201ENST00000602957 2129 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 NSUN5P1-202ENST00000421140 1535 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 NSUN5P2-203ENST00000457352 1529 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 AL662844.4-201ENST00000606367 2838 ntBASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LIMA1Q9UHB6 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LIMA1Q9UHB6 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms