Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 AP001412.1-201ENST00000608405 714 ntBASIC16.66■□□□□ 0.26
NDE1Q9NXR1 FAM197Y4-202ENST00000622692 608 ntBASIC16.66■□□□□ 0.26
NDE1Q9NXR1 AC010653.2-201ENST00000623505 997 ntBASIC16.66■□□□□ 0.26
NDE1Q9NXR1 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.66■□□□□ 0.26
NDE1Q9NXR1 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 AL365203.3-201ENST00000609742 2057 ntBASIC16.65■□□□□ 0.26
NDE1Q9NXR1 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 HES2-202ENST00000377836 507 ntTSL 2 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 AC112698.1-201ENST00000510299 916 ntBASIC16.65■□□□□ 0.26
NDE1Q9NXR1 AP002490.2-201ENST00000524791 560 ntBASIC16.65■□□□□ 0.26
NDE1Q9NXR1 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 NORAD-201ENST00000565493 5339 ntBASIC16.65■□□□□ 0.26
NDE1Q9NXR1 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.65■□□□□ 0.26
NDE1Q9NXR1 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
NDE1Q9NXR1 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 AC007663.1-201ENST00000438948 1240 ntBASIC16.64■□□□□ 0.25
NDE1Q9NXR1 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NDE1Q9NXR1 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms