Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
MMP28Q9H239 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 DUT-205ENST00000558813 769 ntTSL 2 BASIC15.21■□□□□ 0.03
MMP28Q9H239 NT5C-211ENST00000582170 653 ntTSL 3 BASIC15.21■□□□□ 0.03
MMP28Q9H239 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC15.21■□□□□ 0.03
MMP28Q9H239 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 AP002414.2-201ENST00000591780 3365 ntBASIC15.21■□□□□ 0.03
MMP28Q9H239 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MMP28Q9H239 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MMP28Q9H239 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
MMP28Q9H239 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.21■□□□□ 0.02
MMP28Q9H239 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
MMP28Q9H239 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MMP28Q9H239 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
MMP28Q9H239 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
MMP28Q9H239 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
MMP28Q9H239 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 AC036111.1-201ENST00000533973 1582 ntBASIC15.2■□□□□ 0.02
MMP28Q9H239 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 AL365203.3-201ENST00000609742 2057 ntBASIC15.2■□□□□ 0.02
MMP28Q9H239 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
MMP28Q9H239 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 INGX-201ENST00000359239 846 ntBASIC15.2■□□□□ 0.02
MMP28Q9H239 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 MIR564-202ENST00000385049 94 ntBASIC15.2■□□□□ 0.02
MMP28Q9H239 AC113347.1-201ENST00000413321 391 ntBASIC15.2■□□□□ 0.02
MMP28Q9H239 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC15.2■□□□□ 0.02
MMP28Q9H239 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
MMP28Q9H239 AL512604.3-201ENST00000569583 964 ntBASIC15.2■□□□□ 0.02
MMP28Q9H239 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 GPX4-207ENST00000589115 812 ntTSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 AL590326.2-201ENST00000625139 305 ntBASIC15.2■□□□□ 0.02
MMP28Q9H239 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
MMP28Q9H239 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
MMP28Q9H239 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.19■□□□□ 0.02
MMP28Q9H239 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.19■□□□□ 0.02
MMP28Q9H239 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
MMP28Q9H239 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC15.19■□□□□ 0.02
MMP28Q9H239 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.19■□□□□ 0.02
MMP28Q9H239 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 HMGA1P5-201ENST00000412453 271 ntBASIC15.19■□□□□ 0.02
MMP28Q9H239 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC15.19■□□□□ 0.02
MMP28Q9H239 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.19■□□□□ 0.02
MMP28Q9H239 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 ECEL1P2-202ENST00000465689 757 ntBASIC15.19■□□□□ 0.02
MMP28Q9H239 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC15.19■□□□□ 0.02
MMP28Q9H239 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
MMP28Q9H239 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC15.19■□□□□ 0.02
MMP28Q9H239 CR769767.2-201ENST00000622735 460 ntBASIC15.19■□□□□ 0.02
MMP28Q9H239 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
MMP28Q9H239 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
MMP28Q9H239 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.19■□□□□ 0.02
MMP28Q9H239 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
MMP28Q9H239 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms