Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 PTCHD3P3-201ENST00000403073 906 ntBASIC17.04■□□□□ 0.32
VPS35Q96QK1 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 AC098831.1-202ENST00000438821 336 ntBASIC17.04■□□□□ 0.32
VPS35Q96QK1 RPS15P9-201ENST00000494093 319 ntBASIC17.04■□□□□ 0.32
VPS35Q96QK1 AC079776.4-201ENST00000511039 504 ntBASIC17.04■□□□□ 0.32
VPS35Q96QK1 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 BX640515.1-201ENST00000617215 977 ntBASIC17.04■□□□□ 0.32
VPS35Q96QK1 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 AC117500.6-201ENST00000624871 588 ntBASIC17.04■□□□□ 0.32
VPS35Q96QK1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
VPS35Q96QK1 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS35Q96QK1 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 TERC-201ENST00000602385 541 ntBASIC17.03■□□□□ 0.32
VPS35Q96QK1 AC008667.4-201ENST00000607370 168 ntBASIC17.03■□□□□ 0.32
VPS35Q96QK1 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.03■□□□□ 0.32
VPS35Q96QK1 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.03■□□□□ 0.32
VPS35Q96QK1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
VPS35Q96QK1 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 IL9RP2-201ENST00000423948 1312 ntBASIC17.02■□□□□ 0.32
VPS35Q96QK1 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 EML3-212ENST00000494176 2901 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 EML3-216ENST00000529309 2909 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 IGHV3-65-201ENST00000523210 341 ntBASIC17.02■□□□□ 0.32
VPS35Q96QK1 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 AF228730.7-201ENST00000641842 219 ntBASIC17.02■□□□□ 0.32
VPS35Q96QK1 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS35Q96QK1 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS35Q96QK1 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms