Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TRIM47Q96LD4 LTB4R2-202ENST00000528054 3092 ntBASIC20.06■□□□□ 0.8
TRIM47Q96LD4 AC012317.2-201ENST00000623305 2251 ntBASIC20.06■□□□□ 0.8
TRIM47Q96LD4 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 AC190387.1-201ENST00000551683 408 ntBASIC20.06■□□□□ 0.8
TRIM47Q96LD4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 DUT-210ENST00000559935 569 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM47Q96LD4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 AC022145.2-201ENST00000598203 171 ntBASIC20.05■□□□□ 0.8
TRIM47Q96LD4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 AC023141.13-201ENST00000604991 943 ntBASIC20.05■□□□□ 0.8
TRIM47Q96LD4 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM47Q96LD4 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 AC003669.1-201ENST00000334569 611 ntBASIC20.04■□□□□ 0.8
TRIM47Q96LD4 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 AC007064.4-201ENST00000637740 555 ntBASIC20.04■□□□□ 0.8
TRIM47Q96LD4 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM47Q96LD4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 REM2-202ENST00000536884 1331 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 AP002414.1-201ENST00000391405 1147 ntBASIC20.03■□□□□ 0.8
TRIM47Q96LD4 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 AL390955.2-201ENST00000603032 514 ntBASIC20.03■□□□□ 0.8
TRIM47Q96LD4 LINC00628-201ENST00000628516 1289 ntBASIC20.03■□□□□ 0.8
TRIM47Q96LD4 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM47Q96LD4 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms