Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 AL662890.1-201ENST00000396818 632 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC023310.3-201ENST00000557027 670 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC100756.1-201ENST00000562736 682 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC138749.3-201ENST00000567691 622 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC116165.1-201ENST00000611806 668 ntBASIC17.15■□□□□ 0.34
TTC28Q96AY4 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TTC28Q96AY4 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TTC28Q96AY4 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.34
TTC28Q96AY4 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TTC28Q96AY4 REEP1-202ENST00000453231 940 ntTSL 2 BASIC17.14■□□□□ 0.34
TTC28Q96AY4 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC17.14■□□□□ 0.34
TTC28Q96AY4 AP001889.1-201ENST00000525414 633 ntBASIC17.14■□□□□ 0.34
TTC28Q96AY4 AL022328.1-201ENST00000610050 478 ntBASIC17.14■□□□□ 0.34
TTC28Q96AY4 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
TTC28Q96AY4 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC17.14■□□□□ 0.34
TTC28Q96AY4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TTC28Q96AY4 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 AL135999.2-201ENST00000622438 1686 ntBASIC17.14■□□□□ 0.33
TTC28Q96AY4 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TTC28Q96AY4 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 UPF3AP2-201ENST00000457924 1132 ntBASIC17.14■□□□□ 0.33
TTC28Q96AY4 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TTC28Q96AY4 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TTC28Q96AY4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TTC28Q96AY4 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TTC28Q96AY4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TTC28Q96AY4 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
TTC28Q96AY4 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 DUTP2-201ENST00000519164 463 ntBASIC17.13■□□□□ 0.33
TTC28Q96AY4 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 FAM220BP-201ENST00000377689 816 ntBASIC17.13■□□□□ 0.33
TTC28Q96AY4 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 FTLP1-201ENST00000449155 526 ntBASIC17.13■□□□□ 0.33
TTC28Q96AY4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 AC092337.1-201ENST00000568699 1129 ntBASIC17.13■□□□□ 0.33
TTC28Q96AY4 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
TTC28Q96AY4 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.13■□□□□ 0.33
TTC28Q96AY4 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.13■□□□□ 0.33
TTC28Q96AY4 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 NOC2LP1-202ENST00000452600 2235 ntBASIC17.12■□□□□ 0.33
TTC28Q96AY4 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
TTC28Q96AY4 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.12■□□□□ 0.33
TTC28Q96AY4 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms