Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
DEPDC4Q8N2C3 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 LINC02012-201ENST00000608206 1725 ntBASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AL645929.1-201ENST00000420084 975 ntBASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AC005104.2-201ENST00000427818 678 ntBASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AC083849.1-201ENST00000615227 514 ntBASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AC093458.2-201ENST00000623150 629 ntBASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
DEPDC4Q8N2C3 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 KRT18P65-201ENST00000439811 1286 ntBASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 AC113404.2-201ENST00000507884 177 ntBASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 HYMAI.1-201ENST00000620949 238 ntBASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 AL157888.1-201ENST00000631930 593 ntBASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
DEPDC4Q8N2C3 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
DEPDC4Q8N2C3 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms