Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
ATL3Q6DD88 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
ATL3Q6DD88 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
ATL3Q6DD88 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.58■□□□□ 0.73
ATL3Q6DD88 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATL3Q6DD88 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATL3Q6DD88 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 HLA-J-202ENST00000469281 1241 ntBASIC19.58■□□□□ 0.72
ATL3Q6DD88 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 AP002414.4-201ENST00000589764 1148 ntBASIC19.58■□□□□ 0.72
ATL3Q6DD88 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 DBP-204ENST00000599385 709 ntTSL 3 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
ATL3Q6DD88 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATL3Q6DD88 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATL3Q6DD88 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
ATL3Q6DD88 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
ATL3Q6DD88 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 AC092171.3-201ENST00000610122 2651 ntBASIC19.57■□□□□ 0.72
ATL3Q6DD88 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 FUOM-202ENST00000368551 628 ntTSL 3 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 PCED1CP-201ENST00000419887 785 ntBASIC19.57■□□□□ 0.72
ATL3Q6DD88 ABCD1P5-201ENST00000445663 754 ntBASIC19.57■□□□□ 0.72
ATL3Q6DD88 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
ATL3Q6DD88 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.57■□□□□ 0.72
ATL3Q6DD88 PKD1P1-201ENST00000458669 6805 ntBASIC19.56■□□□□ 0.72
ATL3Q6DD88 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 AL391256.1-201ENST00000443260 1855 ntBASIC19.56■□□□□ 0.72
ATL3Q6DD88 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 AL049597.2-201ENST00000565575 961 ntBASIC19.56■□□□□ 0.72
ATL3Q6DD88 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 IL11-204ENST00000590625 1028 ntTSL 2 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 GID4-202ENST00000376345 1391 ntTSL 3 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC19.56■□□□□ 0.72
ATL3Q6DD88 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
ATL3Q6DD88 AC097637.2-201ENST00000624096 1997 ntBASIC19.55■□□□□ 0.72
ATL3Q6DD88 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 PRYP5-201ENST00000451909 266 ntBASIC19.55■□□□□ 0.72
ATL3Q6DD88 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ATL3Q6DD88 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
ATL3Q6DD88 AL139011.1-202ENST00000642063 584 ntBASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms