Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.93■□□□□ 0.46
HDAC4P56524 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.93■□□□□ 0.46
HDAC4P56524 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 AC079781.3-201ENST00000449110 356 ntBASIC17.93■□□□□ 0.46
HDAC4P56524 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC17.93■□□□□ 0.46
HDAC4P56524 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
HDAC4P56524 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.93■□□□□ 0.46
HDAC4P56524 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.93■□□□□ 0.46
HDAC4P56524 GPR89P-201ENST00000407924 1495 ntBASIC17.93■□□□□ 0.46
HDAC4P56524 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
HDAC4P56524 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
HDAC4P56524 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.93■□□□□ 0.46
HDAC4P56524 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.93■□□□□ 0.46
HDAC4P56524 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
HDAC4P56524 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
HDAC4P56524 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
HDAC4P56524 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.92■□□□□ 0.46
HDAC4P56524 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.92■□□□□ 0.46
HDAC4P56524 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 PCDHA12-202ENST00000613593 2588 ntBASIC17.92■□□□□ 0.46
HDAC4P56524 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 AL590787.1-201ENST00000568856 1315 ntBASIC17.92■□□□□ 0.46
HDAC4P56524 FRMD8P1-201ENST00000440433 1524 ntBASIC17.92■□□□□ 0.46
HDAC4P56524 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
HDAC4P56524 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.92■□□□□ 0.46
HDAC4P56524 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HDAC4P56524 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.91■□□□□ 0.46
HDAC4P56524 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
HDAC4P56524 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.91■□□□□ 0.46
HDAC4P56524 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.91■□□□□ 0.46
HDAC4P56524 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.91■□□□□ 0.46
HDAC4P56524 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.91■□□□□ 0.46
HDAC4P56524 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.91■□□□□ 0.46
HDAC4P56524 AC124947.2-201ENST00000547118 1133 ntBASIC17.91■□□□□ 0.46
HDAC4P56524 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.91■□□□□ 0.46
HDAC4P56524 AL139424.1-201ENST00000607572 797 ntBASIC17.91■□□□□ 0.46
HDAC4P56524 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC17.91■□□□□ 0.46
HDAC4P56524 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
HDAC4P56524 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
HDAC4P56524 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
HDAC4P56524 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
HDAC4P56524 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms