Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
CMC4P56277 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 HLA-A-201ENST00000376802 1334 ntBASIC12.78□□□□□ -0.36
CMC4P56277 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
CMC4P56277 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
CMC4P56277 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 ZNF259P1-201ENST00000407656 1365 ntBASIC12.78□□□□□ -0.36
CMC4P56277 PXK-206ENST00000463280 2825 ntTSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC12.78□□□□□ -0.36
CMC4P56277 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
CMC4P56277 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CMC4P56277 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC12.77□□□□□ -0.36
CMC4P56277 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CMC4P56277 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CMC4P56277 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
CMC4P56277 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC12.77□□□□□ -0.36
CMC4P56277 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
CMC4P56277 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC12.77□□□□□ -0.37
CMC4P56277 AC073621.1-201ENST00000392730 636 ntBASIC12.77□□□□□ -0.37
CMC4P56277 PTCHD3P3-201ENST00000403073 906 ntBASIC12.77□□□□□ -0.37
CMC4P56277 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 PRSS29P-201ENST00000440800 595 ntBASIC12.77□□□□□ -0.37
CMC4P56277 AC092910.1-201ENST00000482027 1129 ntBASIC12.77□□□□□ -0.37
CMC4P56277 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 TERC-201ENST00000602385 541 ntBASIC12.77□□□□□ -0.37
CMC4P56277 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC12.77□□□□□ -0.37
CMC4P56277 BX640515.1-201ENST00000617215 977 ntBASIC12.77□□□□□ -0.37
CMC4P56277 AC116407.3-201ENST00000623905 1129 ntBASIC12.77□□□□□ -0.37
CMC4P56277 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 TUBB8P12-201ENST00000308911 1335 ntBASIC12.77□□□□□ -0.37
CMC4P56277 TUBB7P-202ENST00000428444 1305 ntBASIC12.77□□□□□ -0.37
CMC4P56277 TUBB8P7-204ENST00000567960 1332 ntBASIC12.77□□□□□ -0.37
CMC4P56277 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 AC129492.6-201ENST00000611383 1305 ntBASIC12.77□□□□□ -0.37
CMC4P56277 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CMC4P56277 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC12.77□□□□□ -0.37
CMC4P56277 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC12.77□□□□□ -0.37
CMC4P56277 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
CMC4P56277 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
CMC4P56277 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC12.76□□□□□ -0.37
CMC4P56277 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
CMC4P56277 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
CMC4P56277 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC12.76□□□□□ -0.37
CMC4P56277 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CMC4P56277 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC12.76□□□□□ -0.37
CMC4P56277 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
CMC4P56277 AC009078.2-202ENST00000463353 338 ntBASIC12.76□□□□□ -0.37
CMC4P56277 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
CMC4P56277 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC12.76□□□□□ -0.37
CMC4P56277 IGHV3-65-201ENST00000523210 341 ntBASIC12.76□□□□□ -0.37
CMC4P56277 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC12.76□□□□□ -0.37
CMC4P56277 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
CMC4P56277 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC12.76□□□□□ -0.37
CMC4P56277 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms