Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.39■□□□□ 0.53
VCPP55072 AC093028.1-201ENST00000622998 982 ntBASIC18.39■□□□□ 0.53
VCPP55072 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC18.39■□□□□ 0.53
VCPP55072 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VCPP55072 AP001094.4-201ENST00000579008 2176 ntBASIC18.39■□□□□ 0.53
VCPP55072 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
VCPP55072 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
VCPP55072 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.39■□□□□ 0.53
VCPP55072 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.39■□□□□ 0.53
VCPP55072 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.39■□□□□ 0.53
VCPP55072 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
VCPP55072 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC18.39■□□□□ 0.53
VCPP55072 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 AC010460.3-201ENST00000511359 1579 ntBASIC18.38■□□□□ 0.53
VCPP55072 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
VCPP55072 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.38■□□□□ 0.53
VCPP55072 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
VCPP55072 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.38■□□□□ 0.53
VCPP55072 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VCPP55072 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 AC092474.2-201ENST00000424288 719 ntBASIC18.38■□□□□ 0.53
VCPP55072 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.38■□□□□ 0.53
VCPP55072 GREM1-201ENST00000560677 623 ntTSL 4 BASIC18.38■□□□□ 0.53
VCPP55072 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
VCPP55072 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
VCPP55072 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC18.38■□□□□ 0.53
VCPP55072 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
VCPP55072 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
VCPP55072 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.38■□□□□ 0.53
VCPP55072 AC009053.2-201ENST00000563701 2365 ntBASIC18.38■□□□□ 0.53
VCPP55072 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
VCPP55072 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
VCPP55072 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.37■□□□□ 0.53
VCPP55072 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC18.37■□□□□ 0.53
VCPP55072 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC18.37■□□□□ 0.53
VCPP55072 LAGE3P1-201ENST00000425356 484 ntBASIC18.37■□□□□ 0.53
VCPP55072 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
VCPP55072 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC18.37■□□□□ 0.53
VCPP55072 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC18.37■□□□□ 0.53
VCPP55072 AC027612.4-201ENST00000605371 583 ntBASIC18.37■□□□□ 0.53
VCPP55072 AC092865.6-201ENST00000642101 219 ntBASIC18.37■□□□□ 0.53
VCPP55072 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
VCPP55072 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.37■□□□□ 0.53
VCPP55072 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
VCPP55072 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
VCPP55072 PCDHA12-202ENST00000613593 2588 ntBASIC18.37■□□□□ 0.53
VCPP55072 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.36■□□□□ 0.53
VCPP55072 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
VCPP55072 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms