Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 RPS2P28-201ENST00000314255 741 ntBASIC17.72■□□□□ 0.43
NEK3P51956 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.72■□□□□ 0.43
NEK3P51956 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.72■□□□□ 0.43
NEK3P51956 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.72■□□□□ 0.43
NEK3P51956 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.72■□□□□ 0.43
NEK3P51956 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17.72■□□□□ 0.43
NEK3P51956 NKAPP1-205ENST00000585790 367 ntBASIC17.72■□□□□ 0.43
NEK3P51956 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.72■□□□□ 0.43
NEK3P51956 PKD1P1-201ENST00000458669 6805 ntBASIC17.72■□□□□ 0.43
NEK3P51956 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
NEK3P51956 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.72■□□□□ 0.43
NEK3P51956 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
NEK3P51956 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
NEK3P51956 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.71■□□□□ 0.43
NEK3P51956 UBALD1-205ENST00000590891 2641 ntBASIC17.71■□□□□ 0.43
NEK3P51956 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.71■□□□□ 0.43
NEK3P51956 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC17.71■□□□□ 0.43
NEK3P51956 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.71■□□□□ 0.43
NEK3P51956 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
NEK3P51956 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.71■□□□□ 0.43
NEK3P51956 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
NEK3P51956 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
NEK3P51956 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
NEK3P51956 AL022342.1-201ENST00000400363 863 ntBASIC17.71■□□□□ 0.43
NEK3P51956 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.71■□□□□ 0.43
NEK3P51956 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.71■□□□□ 0.43
NEK3P51956 AC120114.3-201ENST00000611923 658 ntBASIC17.71■□□□□ 0.43
NEK3P51956 AC073592.5-201ENST00000624854 528 ntBASIC17.71■□□□□ 0.43
NEK3P51956 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.71■□□□□ 0.43
NEK3P51956 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.71■□□□□ 0.43
NEK3P51956 AC079776.2-201ENST00000641154 1609 ntBASIC17.71■□□□□ 0.43
NEK3P51956 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
NEK3P51956 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC17.71■□□□□ 0.43
NEK3P51956 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
NEK3P51956 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
NEK3P51956 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
NEK3P51956 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
NEK3P51956 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
NEK3P51956 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC17.7■□□□□ 0.42
NEK3P51956 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC17.7■□□□□ 0.42
NEK3P51956 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.7■□□□□ 0.42
NEK3P51956 AL590627.1-203ENST00000421194 1026 ntBASIC17.7■□□□□ 0.42
NEK3P51956 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.7■□□□□ 0.42
NEK3P51956 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.7■□□□□ 0.42
NEK3P51956 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.7■□□□□ 0.42
NEK3P51956 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.7■□□□□ 0.42
NEK3P51956 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17.7■□□□□ 0.42
NEK3P51956 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
NEK3P51956 MIR7706-201ENST00000613747 67 ntBASIC17.7■□□□□ 0.42
NEK3P51956 BX640515.1-201ENST00000617215 977 ntBASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms