Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
BRCA1P38398 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.54■□□□□ 0.88
BRCA1P38398 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.54■□□□□ 0.88
BRCA1P38398 RNA5SP410-201ENST00000516285 106 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC20.54■□□□□ 0.88
BRCA1P38398 CTBP2P3-201ENST00000585629 1255 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.54■□□□□ 0.88
BRCA1P38398 5S_rRNA.22-201ENST00000614916 106 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 RPSAP52-203ENST00000622976 1023 ntBASIC20.54■□□□□ 0.88
BRCA1P38398 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
BRCA1P38398 WIZP1-201ENST00000531444 2299 ntBASIC20.53■□□□□ 0.88
BRCA1P38398 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC20.53■□□□□ 0.88
BRCA1P38398 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 RN7SL618P-201ENST00000477850 296 ntBASIC20.53■□□□□ 0.88
BRCA1P38398 CD81-207ENST00000481687 890 ntTSL 2 BASIC20.53■□□□□ 0.88
BRCA1P38398 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
BRCA1P38398 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 AC044860.1-202ENST00000559481 777 ntBASIC20.53■□□□□ 0.88
BRCA1P38398 IGHV3OR16-16-201ENST00000563644 343 ntBASIC20.53■□□□□ 0.88
BRCA1P38398 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC20.53■□□□□ 0.88
BRCA1P38398 MIR6787-201ENST00000616675 61 ntBASIC20.53■□□□□ 0.88
BRCA1P38398 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.53■□□□□ 0.88
BRCA1P38398 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.53■□□□□ 0.88
BRCA1P38398 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
BRCA1P38398 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.53■□□□□ 0.88
BRCA1P38398 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC20.53■□□□□ 0.88
BRCA1P38398 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC20.52■□□□□ 0.88
BRCA1P38398 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
BRCA1P38398 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
BRCA1P38398 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCA1P38398 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC20.52■□□□□ 0.88
BRCA1P38398 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
BRCA1P38398 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC20.52■□□□□ 0.88
BRCA1P38398 AC105021.1-202ENST00000570572 669 ntBASIC20.52■□□□□ 0.88
BRCA1P38398 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.52■□□□□ 0.88
BRCA1P38398 AC068587.10-201ENST00000641210 219 ntBASIC20.52■□□□□ 0.88
BRCA1P38398 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC20.52■□□□□ 0.88
BRCA1P38398 EGFEM1P-202ENST00000431685 1563 ntBASIC20.52■□□□□ 0.88
BRCA1P38398 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.52■□□□□ 0.88
BRCA1P38398 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
BRCA1P38398 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.52■□□□□ 0.88
BRCA1P38398 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
BRCA1P38398 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
BRCA1P38398 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
BRCA1P38398 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
BRCA1P38398 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
BRCA1P38398 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
BRCA1P38398 AL355994.2-201ENST00000447882 704 ntBASIC20.52■□□□□ 0.87
BRCA1P38398 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
BRCA1P38398 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.52■□□□□ 0.87
BRCA1P38398 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
BRCA1P38398 TPRX2P-201ENST00000535362 881 ntBASIC20.52■□□□□ 0.87
BRCA1P38398 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
BRCA1P38398 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
BRCA1P38398 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
BRCA1P38398 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.87
BRCA1P38398 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC20.52■□□□□ 0.87
BRCA1P38398 SRD5A3P1-201ENST00000603021 949 ntBASIC20.52■□□□□ 0.87
BRCA1P38398 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC20.52■□□□□ 0.87
BRCA1P38398 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCA1P38398 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCA1P38398 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
BRCA1P38398 KRT8P44-201ENST00000441609 1350 ntBASIC20.51■□□□□ 0.87
BRCA1P38398 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
BRCA1P38398 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCA1P38398 AC073439.1-201ENST00000624121 1774 ntBASIC20.51■□□□□ 0.87
BRCA1P38398 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC20.51■□□□□ 0.87
BRCA1P38398 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
BRCA1P38398 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCA1P38398 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC20.51■□□□□ 0.87
BRCA1P38398 AC099548.2-209ENST00000480264 625 ntBASIC20.51■□□□□ 0.87
BRCA1P38398 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC20.51■□□□□ 0.87
BRCA1P38398 DOC2GP-202ENST00000514950 1163 ntBASIC20.51■□□□□ 0.87
BRCA1P38398 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC20.51■□□□□ 0.87
BRCA1P38398 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.51■□□□□ 0.87
BRCA1P38398 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
BRCA1P38398 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
BRCA1P38398 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.51■□□□□ 0.87
BRCA1P38398 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.5■□□□□ 0.87
BRCA1P38398 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
BRCA1P38398 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
BRCA1P38398 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms