Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.3■□□□□ 0.36
VIMP08670 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.3■□□□□ 0.36
VIMP08670 KLF13-207ENST00000560473 489 ntTSL 3 BASIC17.3■□□□□ 0.36
VIMP08670 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.3■□□□□ 0.36
VIMP08670 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
VIMP08670 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VIMP08670 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.3■□□□□ 0.36
VIMP08670 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.29■□□□□ 0.36
VIMP08670 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 AC067930.6-201ENST00000623257 4947 ntBASIC17.29■□□□□ 0.36
VIMP08670 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.29■□□□□ 0.36
VIMP08670 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 CRYGFP-201ENST00000418459 633 ntBASIC17.29■□□□□ 0.36
VIMP08670 FAM197Y1-201ENST00000421178 764 ntBASIC17.29■□□□□ 0.36
VIMP08670 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.29■□□□□ 0.36
VIMP08670 KRT18P65-201ENST00000439811 1286 ntBASIC17.29■□□□□ 0.36
VIMP08670 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.29■□□□□ 0.36
VIMP08670 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.29■□□□□ 0.36
VIMP08670 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.29■□□□□ 0.36
VIMP08670 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.29■□□□□ 0.36
VIMP08670 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.29■□□□□ 0.36
VIMP08670 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
VIMP08670 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VIMP08670 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
VIMP08670 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.29■□□□□ 0.36
VIMP08670 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.29■□□□□ 0.36
VIMP08670 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
VIMP08670 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.28■□□□□ 0.36
VIMP08670 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.28■□□□□ 0.36
VIMP08670 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.28■□□□□ 0.36
VIMP08670 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
VIMP08670 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.28■□□□□ 0.36
VIMP08670 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.27■□□□□ 0.36
VIMP08670 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.27■□□□□ 0.36
VIMP08670 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
VIMP08670 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.27■□□□□ 0.36
VIMP08670 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms