Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
HDAC3O15379 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.74■□□□□ 0.27
HDAC3O15379 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.74■□□□□ 0.27
HDAC3O15379 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.73■□□□□ 0.27
HDAC3O15379 LGALS8-AS1-201ENST00000487567 1457 ntBASIC16.73■□□□□ 0.27
HDAC3O15379 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
HDAC3O15379 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDAC3O15379 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
HDAC3O15379 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 AC022188.1-201ENST00000620960 1664 ntBASIC16.73■□□□□ 0.27
HDAC3O15379 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDAC3O15379 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 YBX1P2-201ENST00000489612 999 ntBASIC16.73■□□□□ 0.27
HDAC3O15379 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.73■□□□□ 0.27
HDAC3O15379 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.73■□□□□ 0.27
HDAC3O15379 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.73■□□□□ 0.27
HDAC3O15379 TMEM191A-211ENST00000637163 1067 ntBASIC16.73■□□□□ 0.27
HDAC3O15379 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.73■□□□□ 0.27
HDAC3O15379 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
HDAC3O15379 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.73■□□□□ 0.27
HDAC3O15379 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HDAC3O15379 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC3O15379 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC16.72■□□□□ 0.27
HDAC3O15379 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
HDAC3O15379 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
HDAC3O15379 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC16.72■□□□□ 0.27
HDAC3O15379 BX664615.1-201ENST00000443558 458 ntBASIC16.72■□□□□ 0.27
HDAC3O15379 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.72■□□□□ 0.27
HDAC3O15379 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
HDAC3O15379 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 RNF126P1-202ENST00000569893 925 ntBASIC16.72■□□□□ 0.27
HDAC3O15379 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.72■□□□□ 0.27
HDAC3O15379 AC139887.4-201ENST00000607877 719 ntBASIC16.72■□□□□ 0.27
HDAC3O15379 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HDAC3O15379 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.72■□□□□ 0.27
HDAC3O15379 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
HDAC3O15379 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.72■□□□□ 0.27
HDAC3O15379 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HDAC3O15379 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HDAC3O15379 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HDAC3O15379 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.71■□□□□ 0.27
HDAC3O15379 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HDAC3O15379 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.71■□□□□ 0.27
HDAC3O15379 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HDAC3O15379 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.71■□□□□ 0.27
HDAC3O15379 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms