Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 RARRES2P8-201ENST00000566335 367 ntBASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 AL606495.2-201ENST00000605867 535 ntBASIC32.42■■■□□ 2.78
SHROOM4Q9ULL8 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 COQ9-214ENST00000567933 882 ntTSL 3 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
SHROOM4Q9ULL8 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 MRPS18AP1-201ENST00000414458 589 ntBASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 ARSEP1-201ENST00000420443 635 ntBASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 ATP5G2P4-201ENST00000442175 420 ntBASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 AL592309.1-201ENST00000443127 649 ntBASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 AL513480.1-201ENST00000451731 511 ntBASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC32.4■■■□□ 2.78
SHROOM4Q9ULL8 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 AC243562.1-201ENST00000560672 389 ntBASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 RAB34-224ENST00000636513 888 ntTSL 5 BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SHROOM4Q9ULL8 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 U91328.1-201ENST00000437528 223 ntBASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 SERBP1P5-201ENST00000510079 1181 ntBASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC32.38■■■□□ 2.77
SHROOM4Q9ULL8 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 FST-202ENST00000396947 2538 ntTSL 5 BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 SPDYE7P-202ENST00000420373 878 ntBASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 AC092580.3-201ENST00000430932 139 ntBASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 AC004890.2-204ENST00000481968 304 ntBASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 AC007613.1-201ENST00000572811 2597 ntBASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC32.37■■■□□ 2.77
SHROOM4Q9ULL8 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 AC009118.2-201ENST00000613275 655 ntBASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 AL662799.1-202ENST00000614205 422 ntBASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC32.36■■■□□ 2.77
SHROOM4Q9ULL8 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC32.36■■■□□ 2.77
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms